View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3268_low_1 (Length: 750)

Name: NF3268_low_1
Description: NF3268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3268_low_1
NF3268_low_1
[»] chr1 (3 HSPs)
chr1 (226-731)||(48753592-48754098)
chr1 (264-731)||(49052227-49052694)
chr1 (12-114)||(48754210-48754312)
[»] chr4 (6 HSPs)
chr4 (384-519)||(20488359-20488494)
chr4 (267-380)||(20488155-20488268)
chr4 (610-712)||(20488756-20488858)
chr4 (516-610)||(20488577-20488671)
chr4 (32-105)||(35914347-35914421)
chr4 (287-355)||(35914143-35914211)
[»] chr2 (1 HSPs)
chr2 (687-731)||(18136426-18136470)


Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 226 - 731
Target Start/End: Complemental strand, 48754098 - 48753592
Alignment:
Q  226 gttcatcctatgctaatacccttggcacattgacattgttgttttaacttgcaatgggttgtgcaatgacttttttgacagcttcagcatatgtctt-gt 324  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48754098 gttcatcctatgctaatacccttggcacattgccattgttgttttaacttgcaatgggttgtgcaatgacttttttgacagcttcagcatatgtctttgt 48753999  T
Q  325 gctgataggtaagtgtggattcaagcaggtcttcaagtgaagtctttggattccatccaagctgcttgttgatgattgtcatgtcaggaattctcttgtc 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48753998 gctgataggtaagtgtggattcaagcaggtcttcaagtgaagtctttggattccatccaagctgcttgttgatgatggtcatgtcaggaattctcttgtc 48753899  T
Q  425 actatcatcatatccctcaccgtaaaattctttcgagctcacatcaactgtaggtgtttcaagaggttgatcaccacttacctttgaataaaccttgatc 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48753898 actatcatcatatccctcaccgtaaaattctttcgagctcacatcaactgtaggtgtttcaagaggttgatcaccacttacctttgaataaaccttgatc 48753799  T
Q  525 atcatttcagccagctcccgaaccgtaacctcattgttcgggttacccacattaaatatcttcccattagctctagcagggttttcaatcatcaacaaca 624  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48753798 atcatttcagccagctcccgaaccgtaacctcattgttcgggttacccacattaaatatcttcccattagctctagcagggttttcaatcatcaacaaca 48753699  T
Q  625 ctgcttcaatagcatctttgatataaagaaaagtcctctgagactcaccaccatccacaagcttcaacggctctcctcgaagaagattgttgctgaagca 724  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48753698 ctgcttcaatagcatctttgatataaagataagtcctctgagactcaccaccatccacaagcttcaacggctctcctcgaagaagattgttgctgaagca 48753599  T
Q  725 agcaaga 731  Q
    |||||||    
T  48753598 agcaaga 48753592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 264 - 731
Target Start/End: Complemental strand, 49052694 - 49052227
Alignment:
Q  264 ttgttttaacttgcaatgggttgtgcaatgacttttttgacagcttcagcatatgtcttgtgctgataggtaagtgtggattcaagcaggtcttcaagtg 363  Q
    ||||||||||||||||||| ||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  49052694 ttgttttaacttgcaatggtttgtgcaatgactttcttaatagcttcagcatatgtcttgtgctgataggtaagtgtggattcaagcaggtcctcaagtg 49052595  T
Q  364 aagtctttggattccatccaagctgcttgttgatgattgtcatgtcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagct 463  Q
    ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49052594 aagtcttcggattccatccaagctgcttgttgatgatggtcatatcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagct 49052495  T
Q  464 cacatcaactgtaggtgtttcaagaggttgatcaccacttacctttgaataaaccttgatcatcatttcagccagctcccgaaccgtaacctcattgttc 563  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||    
T  49052494 cacatcaattgtaggagtttcaagaggttgatcaccacttacctttgaataaaccttgatcatcatttcagctagctcccgaactgtaacctcgttgttc 49052395  T
Q  564 gggttacccacattaaatatcttcccattagctctagcagggttttcaatcatcaacaacactgcttcaatagcatctttgatataaagaaaagtcctct 663  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49052394 gggttacccacattaaatatcttgccattagctctagcagggttttcaatcatcaacaacactgcctcaatagcatctttgatataaagaaaagtcctct 49052295  T
Q  664 gagactcaccaccatccacaagcttcaacggctctcctcgaagaagattgttgctgaagcaagcaaga 731  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  49052294 gagactcaccaccatctacaagcttcaacggctctccacgaagaagattgttgctgaagcaagcaaga 49052227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 48754312 - 48754210
Alignment:
Q  12 atcatcatatgtagttaatacaaacaagagaatcataattcaaatttctgctagagcaacctaacaaagctttatcataaatatgaactgtcaaacctta 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  48754312 atcatcatatgtagttaatacaaacaagagaatcataattcaaatttctgctagagcaacctaacaaagccttatcataaatatgaactgtcaaaactta 48754213  T
Q  112 acc 114  Q
    |||    
T  48754212 acc 48754210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 7e-42; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 384 - 519
Target Start/End: Original strand, 20488359 - 20488494
Alignment:
Q  384 agctgcttgttgatgattgtcatgtcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagctcacatcaactgtaggtgttt 483  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||    
T  20488359 agctgcttgttgattatggtcatgtcaggaattctcttgtcactatcatcatatccctcaccataaaattctttcgagctcacatcaatcgtaggtgttt 20488458  T
Q  484 caagaggttgatcaccacttacctttgaataaacct 519  Q
    || | ||||||   ||||| ||||||||||| ||||    
T  20488459 caggtggttgagttccactaacctttgaatagacct 20488494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 267 - 380
Target Start/End: Original strand, 20488155 - 20488268
Alignment:
Q  267 ttttaacttgcaatgggttgtgcaatgacttttttgacagcttcagcatatgtcttgtgctgataggtaagtgtggattcaagcaggtcttcaagtgaag 366  Q
    |||||||||||||| ||||| ||||||||||| || |  ||||| || |||||| ||||||||||||||||||||||||||||||||||   ||||||||    
T  20488155 ttttaacttgcaattggttgagcaatgactttcttaatggcttcggcgtatgtcctgtgctgataggtaagtgtggattcaagcaggtcccaaagtgaag 20488254  T
Q  367 tctttggattccat 380  Q
    ||||||||||||||    
T  20488255 tctttggattccat 20488268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 610 - 712
Target Start/End: Original strand, 20488756 - 20488858
Alignment:
Q  610 caatcatcaacaacactgcttcaatagcatctttgatataaagaaaagtcctctgagactcaccaccatccacaagcttcaacggctctcctcgaagaag 709  Q
    |||||||||| || || |||||||||||||||||||| |||| ||| || ||||| || |||||||||||||||||||| |  |||||||||| ||||||    
T  20488756 caatcatcaataagacagcttcaatagcatctttgatgtaaacaaatgttctctgggattcaccaccatccacaagcttgaggggctctcctctaagaag 20488855  T
Q  710 att 712  Q
    |||    
T  20488856 att 20488858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 516 - 610
Target Start/End: Original strand, 20488577 - 20488671
Alignment:
Q  516 accttgatcatcatttcagccagctcccgaaccgtaacctcattgttcgggttacccacattaaatatcttcccattagctctagcagggttttc 610  Q
    |||| ||||||||||||||| |||| || ||| |||||||||||||| ||||||||||||||||| || |  ||||| ||||| |||||||||||    
T  20488577 acctggatcatcatttcagcgagctgcctaactgtaacctcattgtttgggttacccacattaaaaatatggccattggctctggcagggttttc 20488671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 35914421 - 35914347
Alignment:
Q  32 caaacaagagaat-cataattcaaatttctgctagagcaacctaacaaagctttatcataaatatgaactgtcaa 105  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||| | |||| | |||||||||    
T  35914421 caaacgagagaattcataattcaaatatctgctagagcaacctaacaaagctttataagaaatgttaactgtcaa 35914347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 287 - 355
Target Start/End: Complemental strand, 35914211 - 35914143
Alignment:
Q  287 tgcaatgacttttttgacagcttcagcatatgtcttgtgctgataggtaagtgtggattcaagcaggtc 355  Q
    ||||||||||| ||| | ||||| |||||| |||| ||||| |||||||||||||||||||||||||||    
T  35914211 tgcaatgacttctttaatagcttaagcataagtctcgtgcttataggtaagtgtggattcaagcaggtc 35914143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 687 - 731
Target Start/End: Original strand, 18136426 - 18136470
Alignment:
Q  687 ttcaacggctctcctcgaagaagattgttgctgaagcaagcaaga 731  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  18136426 ttcaacggctctccacgaagaagattgttgctgaagcaagcaaga 18136470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University