View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3268_low_2 (Length: 369)
Name: NF3268_low_2
Description: NF3268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3268_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 112 - 352
Target Start/End: Complemental strand, 41480018 - 41479778
Alignment:
| Q |
112 |
caaaaacggaaaggcaaactgaaactacatgagtctaagtggaagagacgacagaggataaaaaggcatgaggagatgtcaacttagaaaactgatacca |
211 |
Q |
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| T |
41480018 |
caaaaacggaaaggcaaactgaaactacatgagtctaagtggaagagacgacagaggataaaaaggcatgaggagatgtcaacttagaaaactgatacca |
41479919 |
T |
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| Q |
212 |
atttaaaagaaaggattccagaaattaacttttcattacttctcaacaggtttcattacataagattacaacttcaagaactagaactagcataagtgga |
311 |
Q |
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| T |
41479918 |
atttaaaagaaaggattccagaaattaacttttcattacttctcaacaggtttcattacataagattacaacttcaagaactagaactagcataagtgga |
41479819 |
T |
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| Q |
312 |
cttaaagtcttctaaatgcttctctgaagagtccaataagt |
352 |
Q |
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| T |
41479818 |
cttaaagtcttctaaatgcttctctgaagagtccaataagt |
41479778 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 24084564 - 24084511
Alignment:
| Q |
39 |
gaggatgaaccagaaagtagtttggatttcttagttatgacttatgtctttattt |
93 |
Q |
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| T |
24084564 |
gaggatgaactagaaagtagttaggatttatgagttatg-cttatgtctttattt |
24084511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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