View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3268_low_6 (Length: 302)
Name: NF3268_low_6
Description: NF3268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3268_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 45515110 - 45514843
Alignment:
| Q |
17 |
actactgtcccaagccaatattaatctcttttatagtatttgatattttgattaattatatatatgaactttcacatatctacgcataacgcaagttgat |
116 |
Q |
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| T |
45515110 |
actactgtcccaagccaatattaatctcttttatagtatttgat--------taattatatatatgaactttcacatatctacgcataacgcaagttgat |
45515019 |
T |
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| Q |
117 |
gatggaataaaagcacaagttgggatcaggcaggaaagagttttggaaaataagttaaatgtatagatattttttatatgtacatgagtggggacatggg |
216 |
Q |
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| T |
45515018 |
gatggaataaaagcacaagttgggatcaggcaggaaagagttttggaaaataagttaaatgtatagatattttttatatgtacatgagtggggacatggg |
45514919 |
T |
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| Q |
217 |
gaagaaaagaattgaagtaaagtaaattaatgattaannnnnnnnnnnngggccaatgattccccttctatctgtg |
292 |
Q |
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| T |
45514918 |
gaagaaaagaattgaagtaaagtaaattaatgattaattttttttttttgggccaatgattccccttctatctgtg |
45514843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 19639660 - 19639888
Alignment:
| Q |
17 |
actactgtcccaagccaatattaatctcttttatagtatttgatattttgattaattatatatatgaactttcacatatctacgcataacgcaagttgat |
116 |
Q |
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| T |
19639660 |
actactgtcccaagccaatattaatctcttttatagtatttg--------attaattatatatatgaactttcacatatctacgcataacgcaagttgat |
19639751 |
T |
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| Q |
117 |
gatggaataaaagcacaagttgggatcaggcaggaaagagttttggaaaataagttaaatgtatagatattttttatatgtacatgagtggggacatggg |
216 |
Q |
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| T |
19639752 |
gatggaataaaagcacaagttgggatcaggcaggaaagagttttggaaaataagttaaatgtatagatattttttatatgtacatgagtggggacatgcg |
19639851 |
T |
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| Q |
217 |
gaagaaaagaattgaagtaaagtaaattaatgattaa |
253 |
Q |
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| T |
19639852 |
gaagaaaagaattgaagtaaagtaaattaatgattaa |
19639888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 19838253 - 19838481
Alignment:
| Q |
17 |
actactgtcccaagccaatattaatctcttttatagtatttgatattttgattaattatatatatgaactttcacatatctacgcataacgcaagttgat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19838253 |
actactgtcccaagccaatattaatctcttttatagtatttg--------attaattatatatatgaactttcacatatctacgcataacgcaagttgat |
19838344 |
T |
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| Q |
117 |
gatggaataaaagcacaagttgggatcaggcaggaaagagttttggaaaataagttaaatgtatagatattttttatatgtacatgagtggggacatggg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19838345 |
gatggaataaaagcacaagttgggatcaggcaggaaagagttttggaaaataagttaaatgtatagatattttttatatgtacatgagtggggacatgcg |
19838444 |
T |
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| Q |
217 |
gaagaaaagaattgaagtaaagtaaattaatgattaa |
253 |
Q |
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| T |
19838445 |
gaagaaaagaattgaagtaaagtaaattaatgattaa |
19838481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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