View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3268_low_7 (Length: 251)
Name: NF3268_low_7
Description: NF3268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3268_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 35417197 - 35417419
Alignment:
| Q |
14 |
agaagaaatcagcttcataagggtcaaaagttctcacatcacttttcaacaatgcggtgtgaatagcaacttctgaagcaaacaaatgtgttttacacct |
113 |
Q |
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| T |
35417197 |
agaagaaatcagcttcataagggtcaaaagttctcacatcacttttcaacaatgcggtgtgaatagcaacttctgaagcaaacaaatgtgttttacacct |
35417296 |
T |
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| Q |
114 |
cccatttacaagccaatcattgttgtattttgaaggtagctcataaacaaacaccttcaaatttttcaacatatctaatgagttatgagaaacaatgttg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35417297 |
cccatttacaagccaatcattgttgtattttgaaggtagctcataaacaaacaccttcaaatttttcaacatatctaatgagttatgagaaacaacgttg |
35417396 |
T |
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| Q |
214 |
gaattagaatttgagacaatggt |
236 |
Q |
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| T |
35417397 |
gaattagaatttgagacaatggt |
35417419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 12172867 - 12172910
Alignment:
| Q |
14 |
agaagaaatcagcttcataagggtcaaaagttctcacatcactt |
57 |
Q |
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| T |
12172867 |
agaaaaaatcagcttcgtaagggtcaaaagttctaacatcactt |
12172910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 21056114 - 21056021
Alignment:
| Q |
14 |
agaagaaatcagcttcataagggtcaaaagttctcacatcacttttcaacaatgcggtgtgaatagcaacttctgaagcaaacaaatgtgtttt |
107 |
Q |
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|||| |||||||||||||| |||||||||||||| ||||||||| | || || || | ||||||||||||||||||||||| ||||| ||||| |
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| T |
21056114 |
agaaaaaatcagcttcatatgggtcaaaagttcttacatcacttgttaataaagctctatgaatagcaacttctgaagcaaataaatgagtttt |
21056021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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