View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3268_low_8 (Length: 249)

Name: NF3268_low_8
Description: NF3268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3268_low_8
NF3268_low_8
[»] chr4 (14 HSPs)
chr4 (95-240)||(46709131-46709276)
chr4 (1-96)||(37177797-37177892)
chr4 (1-95)||(18936848-18936942)
chr4 (1-95)||(11147013-11147112)
chr4 (17-96)||(40533961-40534040)
chr4 (12-96)||(18381491-18381575)
chr4 (17-96)||(3102538-3102617)
chr4 (3-94)||(3102713-3102804)
chr4 (3-94)||(40534136-40534227)
chr4 (17-93)||(13690216-13690292)
chr4 (31-97)||(5121008-5121074)
chr4 (17-97)||(18936673-18936752)
chr4 (17-94)||(9231580-9231657)
chr4 (3-75)||(9231753-9231825)
[»] chr8 (12 HSPs)
chr8 (3-97)||(397178-397272)
chr8 (2-95)||(41539769-41539862)
chr8 (3-94)||(2814417-2814508)
chr8 (1-96)||(14193322-14193416)
chr8 (3-94)||(37994881-37994972)
chr8 (17-94)||(14193512-14193588)
chr8 (17-94)||(37994708-37994785)
chr8 (25-96)||(41539966-41540036)
chr8 (25-96)||(2814241-2814311)
chr8 (29-94)||(40587989-40588054)
chr8 (17-96)||(44036812-44036891)
chr8 (33-94)||(397007-397067)
[»] chr5 (29 HSPs)
chr5 (3-96)||(5146676-5146769)
chr5 (2-94)||(19898926-19899018)
chr5 (3-94)||(33377821-33377912)
chr5 (3-94)||(228717-228808)
chr5 (1-96)||(8489121-8489216)
chr5 (1-94)||(6518203-6518296)
chr5 (3-94)||(13823321-13823412)
chr5 (3-92)||(8323881-8323970)
chr5 (3-96)||(26534671-26534764)
chr5 (3-94)||(791592-791683)
chr5 (1-96)||(35454621-35454715)
chr5 (1-94)||(40881792-40881883)
chr5 (26-96)||(14069859-14069928)
chr5 (1-77)||(40881990-40882066)
chr5 (17-94)||(26534506-26534583)
chr5 (17-94)||(35454451-35454527)
chr5 (22-94)||(14388512-14388583)
chr5 (23-91)||(19897228-19897295)
chr5 (3-94)||(130421-130512)
chr5 (17-96)||(6518390-6518468)
chr5 (17-95)||(130253-130331)
chr5 (17-94)||(5146504-5146580)
chr5 (17-94)||(8323707-8323784)
chr5 (6-79)||(27319643-27319716)
chr5 (17-94)||(42630711-42630788)
chr5 (26-97)||(13823147-13823217)
chr5 (33-91)||(228987-229044)
chr5 (37-94)||(791810-791867)
chr5 (26-91)||(27319482-27319546)
[»] chr6 (8 HSPs)
chr6 (3-94)||(21389021-21389112)
chr6 (3-93)||(33022341-33022431)
chr6 (17-93)||(7789857-7789933)
chr6 (4-93)||(28472535-28472624)
chr6 (17-95)||(33022163-33022241)
chr6 (8-93)||(29859728-29859813)
chr6 (17-96)||(21389209-21389287)
chr6 (12-83)||(7789678-7789748)
[»] chr2 (21 HSPs)
chr2 (2-94)||(38086139-38086231)
chr2 (9-96)||(15332841-15332928)
chr2 (3-96)||(13280008-13280101)
chr2 (3-94)||(31470587-31470677)
chr2 (3-94)||(42028578-42028669)
chr2 (17-94)||(31860079-31860156)
chr2 (17-94)||(42028765-42028842)
chr2 (3-94)||(16115046-16115137)
chr2 (25-96)||(36059282-36059353)
chr2 (1-94)||(3671994-3672087)
chr2 (17-94)||(16115231-16115308)
chr2 (3-96)||(31860258-31860351)
chr2 (3-95)||(2059657-2059749)
chr2 (33-94)||(13279840-13279901)
chr2 (17-93)||(3671822-3671897)
chr2 (17-96)||(7317633-7317712)
chr2 (31-97)||(7317836-7317902)
chr2 (37-94)||(31470785-31470841)
chr2 (25-94)||(38085967-38086035)
chr2 (17-94)||(2059490-2059567)
chr2 (37-94)||(15330449-15330505)
[»] chr7 (10 HSPs)
chr7 (3-94)||(7298635-7298726)
chr7 (3-94)||(40521189-40521280)
chr7 (3-96)||(19805587-19805680)
chr7 (17-94)||(28948993-28949069)
chr7 (23-96)||(40521014-40521086)
chr7 (33-96)||(7298840-7298902)
chr7 (17-94)||(16979605-16979681)
chr7 (22-91)||(46567960-46568028)
chr7 (3-64)||(46568131-46568192)
chr7 (17-94)||(19804797-19804874)
[»] chr3 (13 HSPs)
chr3 (3-94)||(36635411-36635502)
chr3 (2-96)||(19580482-19580576)
chr3 (3-95)||(33214442-33214534)
chr3 (3-87)||(36274126-36274210)
chr3 (3-94)||(27073081-27073172)
chr3 (1-94)||(11651000-11651093)
chr3 (17-94)||(33219072-33219149)
chr3 (33-95)||(27072912-27072974)
chr3 (17-95)||(33214626-33214704)
chr3 (17-92)||(10598810-10598885)
chr3 (17-96)||(36274312-36274391)
chr3 (32-94)||(10599000-10599062)
chr3 (26-91)||(36635241-36635305)
[»] chr1 (26 HSPs)
chr1 (2-97)||(28217691-28217786)
chr1 (3-94)||(50892963-50893054)
chr1 (1-95)||(23346418-23346512)
chr1 (2-94)||(48871409-48871501)
chr1 (3-94)||(41833874-41833965)
chr1 (1-93)||(50904992-50905086)
chr1 (3-93)||(39669231-39669321)
chr1 (17-97)||(28217527-28217606)
chr1 (3-94)||(10227712-10227803)
chr1 (22-93)||(50905104-50905175)
chr1 (2-64)||(7062037-7062099)
chr1 (17-96)||(7062184-7062262)
chr1 (17-96)||(10227899-10227978)
chr1 (3-94)||(26552165-26552256)
chr1 (17-90)||(19059378-19059451)
chr1 (22-94)||(48752586-48752657)
chr1 (3-86)||(19059551-19059634)
chr1 (17-94)||(48871247-48871323)
chr1 (17-94)||(50893150-50893226)
chr1 (23-94)||(42180571-42180641)
chr1 (17-94)||(4156892-4156968)
chr1 (3-64)||(42180745-42180806)
chr1 (17-85)||(23346608-23346675)
chr1 (23-94)||(41834069-41834139)
chr1 (17-92)||(26551992-26552067)
chr1 (17-63)||(39669087-39669133)
[»] scaffold0140 (1 HSPs)
scaffold0140 (12-95)||(15846-15929)
[»] scaffold0214 (2 HSPs)
scaffold0214 (17-94)||(11814-11891)
scaffold0214 (3-90)||(11630-11717)
[»] scaffold0135 (2 HSPs)
scaffold0135 (17-94)||(37446-37523)
scaffold0135 (3-75)||(37619-37691)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 95 - 240
Target Start/End: Original strand, 46709131 - 46709276
Alignment:
Q  95 ttacggacaccacagtttaggttttagaatcaaggaataattcatatggtggctagaataatactctccatagaattgtcaactagcaacattcaaagtt 194  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46709131 ttacggacaccacggtttaggttttagaatcaaggaataattcatatggtggctagaataatactctccatagaattgtcaactagcaacattcaaagtt 46709230  T
Q  195 gagagataagcacgttgcattgaactcaaacatacccatcttcatt 240  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  46709231 gagagataagcacgttgcattgaactcaaccatacccatcttcatt 46709276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 37177797 - 37177892
Alignment:
Q  1 caaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| |||| ||||||||||    
T  37177797 caaattattttaaaataaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttatgttcgttcctagacaagaatttctctt 37177892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 18936848 - 18936942
Alignment:
Q  1 caaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 95  Q
    |||||||||| |||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||    
T  18936848 caaattattttaaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatattaggttcgttcctagacaagaatttctct 18936942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 11147112 - 11147013
Alignment:
Q  1 caaattatttaaaaataaaacaatgac-----gtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 95  Q
    |||||||||| ||||||||||||||||     || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  11147112 caaattattttaaaataaaacaatgacaagacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttcctacacaagaatttctct 11147013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 40534040 - 40533961
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||||    
T  40534040 aaaacaacgacgtatcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctctt 40533961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 18381491 - 18381575
Alignment:
Q  12 aaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    ||||||||||||||| || |||||||||||||||||| || ||||||||| || |||||||||||||||||||| ||||||||||    
T  18381491 aaaataaaacaatgatgtgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgttcctacacaagaatttctctt 18381575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 3102617 - 3102538
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||||    
T  3102617 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 3102538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 3102713 - 3102804
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||    
T  3102713 aattattttaaaaaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 3102804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 40534136 - 40534227
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||    
T  40534136 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 40534227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 13690292 - 13690216
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttct 93  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| |||||||    
T  13690292 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 13690216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 5121008 - 5121074
Alignment:
Q  31 tcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctta 97  Q
    ||||||||||||||||||||| |||||||||||| ||||||| |||||||||||| |||||||||||    
T  5121008 tcatgttttaatttgttgtttgtaagaatgatatgttaggtttgttcctacacaagaatttctctta 5121074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 18936752 - 18936673
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctta 97  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||  ||| |||||||| ||||||| |||||||||||    
T  18936752 aaaaaaatgacgtatcatgttttaatttgttgtttgtaagaatgata-gttatgttcgttcatacacaagaatttctctta 18936673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 9231657 - 9231580
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||||| ||||| ||||||||||||||||||||| |||| ||| ||   ||||||||||||||||||| ||||||||    
T  9231657 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 9231580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 9231753 - 9231825
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgt 75  Q
    |||||||| |||| ||||||| |||||| |||||||||||||||||||| |||| ||||||  ||||||||||    
T  9231753 aattattttaaaagaaaacaacgacgtagcatgttttaatttgttgtttgtaaggatgataggttaggttcgt 9231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 397178 - 397272
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctta 97  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  397178 aattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttataagaatgatatgttaggttcgtttctacacaagaatttctctta 397272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 41539862 - 41539769
Alignment:
Q  2 aaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 95  Q
    ||||||||| |||||||||||| ||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||    
T  41539862 aaattattttaaaataaaacaacgacgtgtcatattttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctct 41539769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 2814417 - 2814508
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||||||  ||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||    
T  2814417 aattatttttaaaaaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 2814508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 14193416 - 14193322
Alignment:
Q  1 caaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    |||||||||| ||||||||||||||| || ||||||||||||||||||||| ||| ||| |||| ||||||||||||||| |||||||||||||||    
T  14193416 caaattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaaaaataatatgttaggttcgttccta-acaaaaatttctctt 14193322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 37994881 - 37994972
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| |||| ||||||| ||||| |||||||||||||| |||||| |||| ||||||  |||||||||||||||||||| ||||||||    
T  37994881 aattattttaaaagaaaacaacgacgtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 14193512 - 14193588
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||    
T  14193512 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 14193588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 37994785 - 37994708
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||||| |||||||||||||||||||| |||||| |||| ||||||  |||||||||||||||||||| ||||||||    
T  37994785 aaaacaacgacgtatcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 41539966 - 41540036
Alignment:
Q  25 gacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    ||||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||||    
T  41539966 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctctt 41540036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 2814311 - 2814241
Alignment:
Q  25 gacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    ||||| ||||| ||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||||    
T  2814311 gacgtgtcatgatttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctctt 2814241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 40587989 - 40588054
Alignment:
Q  29 tatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||||||||||||||||| ||||||| ||||||||||||  ||||||||||||| | ||||||||    
T  40587989 tatcatgttttaatttgttatttataaaaatgatatattaaattcgttcctacaccagaatttctc 40588054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 44036891 - 44036812
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    ||||||| ||||| |||||||| |||||||||||| |||| ||||||  |||||||||| ||||||||  ||||||||||    
T  44036891 aaaacaacgacgtgtcatgtttgaatttgttgtttgtaaggatgataggttaggttcgtccctacacatgaatttctctt 44036812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 397067 - 397007
Alignment:
Q  33 atgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||||||| |||||| |||||||||||  |||||||||||||| ||||| ||||||||    
T  397067 atgttttaatttattgtttgtaagaatgata-gttaggttcgttcctgcacaagaatttctc 397007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 5146676 - 5146769
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||    
T  5146676 aattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtttctacacaagaatttctctt 5146769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 19898926 - 19899018
Alignment:
Q  2 aaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||||||| |||||||||||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  19898926 aaattattttaaaataaaacaatgacatgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgttcctacacaagaatttctc 19899018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 33377821 - 33377912
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||| || ||||||||    
T  33377821 aattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacataagaatttctc 33377912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 228808 - 228717
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| ||||||||||||| |||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||  ||||||||    
T  228808 aattattttaaaataaaacaataacgtgtcatgttttaatttattgtttataagaatgatatgttaggttcgttcctacacagtaatttctc 228717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 8489216 - 8489121
Alignment:
Q  1 caaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    |||||||||| |||||||||||||||||| |||| |||||||||||||||| |||||||||||| |||| || |||||||||||| ||||||||||    
T  8489216 caaattattttaaaataaaacaatgacgtgtcatattttaatttgttgtttgtaagaatgatatgttagatttgttcctacacaagaatttctctt 8489121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 6518296 - 6518203
Alignment:
Q  1 caaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||||| |||||||||||||||| |   ||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||    
T  6518296 caaattattttaaaataaaacaatgacatgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 6518203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 13823321 - 13823412
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| |||||||||||||||||| ||||||||||||||||| ||| ||| |||||||| ||| |||||||||||||||| ||||||||    
T  13823321 aattattttaaaataaaacaatgacgtgtcatgttttaatttgttatttgtaaaaatgatatgttaagttcgttcctacacaagaatttctc 13823412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 8323881 - 8323970
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttc 92  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||    
T  8323881 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 8323970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 26534671 - 26534764
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||||    
T  26534671 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 26534764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 791683 - 791592
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||| ||  |||||||||||||||||||||||||||||    
T  791683 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaaaaatttctc 791592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 35454621 - 35454715
Alignment:
Q  1 caaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    ||||||||||  || |||||||||||||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||| ||||    
T  35454621 caaattatttttaactaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttttctt 35454715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 40881883 - 40881792
Alignment:
Q  1 caaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||||| |||||||||||||||||| |||||||||||||| |||||| |||||||   || |||||||||||||||||||| ||||||||    
T  40881883 caaattattttaaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaat--aatgttaggttcgttcctacacaacaatttctc 40881792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 14069928 - 14069859
Alignment:
Q  26 acgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    |||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||    
T  14069928 acgtgtcatgttttaatttgttgtttataagaatgata-gttaggttcgttcctacacaagaatttctctt 14069859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 40881990 - 40882066
Alignment:
Q  1 caaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttc 77  Q
    |||||||||| ||||||||||||| |||| |||| |||||||||||||||| |||||||||||| |||| |||||||    
T  40881990 caaattattttaaaataaaacaataacgtgtcatattttaatttgttgtttgtaagaatgatatgttagattcgttc 40882066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 26534583 - 26534506
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||||| ||||| ||||||||||||||||||||| ||||  |||||  |||||||||||||||||||| ||||||||    
T  26534583 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctc 26534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 35454527 - 35454451
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||||  |||||||||||| ||||||| ||||||||    
T  35454527 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 35454451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 14388512 - 14388583
Alignment:
Q  22 aatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| ||||||||||||||||||||| |||||||||||  ||||||| |||||||||||| ||||||||    
T  14388512 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggtttgttcctacacaagaatttctc 14388583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 19897295 - 19897228
Alignment:
Q  23 atgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaattt 91  Q
    ||||||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||||| |||||    
T  19897295 atgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaataattt 19897228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 130421 - 130512
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| |||| ||||||| ||||| | ||||||||||||||||||| |||| ||||||  ||||||||||| ||||| || ||||||||    
T  130421 aattattttaaaagaaaacaacgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttactacaaaagaatttctc 130512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 6518390 - 6518468
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    |||| ||||| ||||||| |||||||||||||||| |||||||||||  ||||||||||| |||||||| ||||||||||    
T  6518390 aaaaaaatgatgtatcatattttaatttgttgtttgtaagaatgata-gttaggttcgttactacacaagaatttctctt 6518468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 130331 - 130253
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 95  Q
    ||||||| ||||| ||||||||||||||||||||| ||||  ||| |  |||||||||||||||||||| |||||||||    
T  130331 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgacaggttaggttcgttcctacacaagaatttctct 130253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 5146580 - 5146504
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||| ||| |||| |||||||||||||| |||||| |||||||||||  |||||||||||||||||||| ||||||||    
T  5146580 aaaaaaataacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaataatttctc 5146504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 8323784 - 8323707
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||||| ||||| |||||||||||||| |||||| |||  ||||||  |||||||||||||||||||| ||||||||    
T  8323784 aaaacaacgacgtgtcatgttttaatttattgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 8323707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 27319643 - 27319716
Alignment:
Q  6 tatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcct 79  Q
    ||||| ||||||||||||||| || |||| |||||||||||||||| |||||||||||| |||| || ||||||    
T  27319643 tattttaaaataaaacaatgatgtttcatattttaatttgttgtttgtaagaatgatatgttagattggttcct 27319716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 42630788 - 42630711
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||||| || |||||||||| |||||||||| |||| ||||||  |||||||||||| ||||||| ||||||||    
T  42630788 aaaacaatgaagtgtcatgttttagtttgttgtttgtaaggatgataggttaggttcgttcatacacaagaatttctc 42630711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 13823217 - 13823147
Alignment:
Q  26 acgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctta 97  Q
    |||| |||||||||| ||| ||||||||| ||||||||  |||||||||||||||||||| |||||||||||    
T  13823217 acgtgtcatgttttagtttattgtttatacgaatgatag-ttaggttcgttcctacacaagaatttctctta 13823147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 228987 - 229044
Alignment:
Q  33 atgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaattt 91  Q
    ||||||||||||||||||| |||||||||||  ||| ||||||| ||||||||||||||    
T  228987 atgttttaatttgttgtttgtaagaatgata-gttatgttcgtttctacacaaaaattt 229044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 791810 - 791867
Alignment:
Q  37 tttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||||||||||||| |||  ||||||  |||||||||||||||||||| ||||||||    
T  791810 tttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 791867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 27319546 - 27319482
Alignment:
Q  26 acgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaattt 91  Q
    ||||||||||||||||||| || ||| |||||||||||  ||| |||| || ||||||||||||||    
T  27319546 acgtatcatgttttaatttattatttgtaagaatgata-gttaagttcattactacacaaaaattt 27319482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 21389112 - 21389021
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| || ||||||||    
T  21389112 aattattttaaaataaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacagaagaatttctc 21389021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 33022341 - 33022431
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttct 93  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| |||||||    
T  33022341 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 33022431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 7789857 - 7789933
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttct 93  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| |||||||    
T  7789857 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcattcctacacaagaatttct 7789933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 28472535 - 28472624
Alignment:
Q  4 attatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttct 93  Q
    ||||||| |||| |||| ||| |||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  28472535 attattttaaaagaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 28472624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 33022241 - 33022163
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 95  Q
    ||||||| ||||| ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| |||||||||    
T  33022241 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaataatttctct 33022163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 29859728 - 29859813
Alignment:
Q  8 tttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttct 93  Q
    |||||||  |||| ||| |||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  29859728 tttaaaagaaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 29859813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 21389209 - 21389287
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||| ||||    
T  21389209 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttatctt 21389287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 7789748 - 7789678
Alignment:
Q  12 aaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacac 83  Q
    |||| ||||||||||| | ||||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  7789748 aaaaaaaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacac 7789678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 38086139 - 38086231
Alignment:
Q  2 aaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| || ||||||||||||||||||    
T  38086139 aaattattttaaaataaaacaatgacgtatcatattttaatttgttgtttgtaagaatgatatgttaggtttgtccctacacaaaaatttctc 38086231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 15332841 - 15332928
Alignment:
Q  9 ttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    ||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| |||||||||||||||||||| ||||||||||    
T  15332841 ttaaaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctctt 15332928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 13280008 - 13280101
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    |||||||| |||| ||||||| ||||||||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||||    
T  13280008 aattattttaaaagaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 13280101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 31470677 - 31470587
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||| ||| |||||||  |||||||||||||||||||| ||||||||    
T  31470677 aattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaagaatttctc 31470587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 42028669 - 42028578
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||    
T  42028669 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctc 42028578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 31860156 - 31860079
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||||  |||||||||||||||||||| ||||||||    
T  31860156 aaaataatgacgtgtcatgttttaatttgttgtttataaggatgataggttaggttcgttcctacacaagaatttctc 31860079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 42028765 - 42028842
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||    
T  42028765 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 42028842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 16115137 - 16115046
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| |||| ||||||| ||||| |||| |||||||||||||||| |||| ||||||  |||||||||||| ||||||||||||||||    
T  16115137 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcttacacaaaaatttctc 16115046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 36059282 - 36059353
Alignment:
Q  25 gacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    ||||| ||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||||    
T  36059282 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctctt 36059353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 3671994 - 3672087
Alignment:
Q  1 caaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||||| |||||||||||||||||| | || |||||||||||| ||| ||| ||||||||||||| ||||||||| || || ||||||||    
T  3671994 caaattattttaaaataaaacaatgacgtgttatattttaatttgttatttgtaaaaatgatatattagattcgttcctccataagaatttctc 3672087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 16115231 - 16115308
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||||| || |||| ||||| |||||||||| |||||||||||  |||||||||||||||||||||||||||||    
T  16115231 aaaacaatgaagtgtcatattttagtttgttgtttgtaagaatgataggttaggttcgttcctacacaaaaatttctc 16115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 31860258 - 31860351
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    |||||||| |||| ||||||| || || ||||||||||||||||||||| |||| ||| ||  |||||||||||||||||||| ||||||||||    
T  31860258 aattattttaaaagaaaacaacgatgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctctt 31860351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 2059657 - 2059749
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 95  Q
    |||||||| |||| ||||||| ||||| |||| |||||||||||||||| |||| ||||||  ||||||||||||| |||||| |||||||||    
T  2059657 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccaacacaataatttctct 2059749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 13279901 - 13279840
Alignment:
Q  33 atgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||||    
T  13279901 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 13279840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 3671897 - 3671822
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttct 93  Q
    |||| ||||| || ||||||||||||||||||||| |||||||||||  |||||||||||||||||||| |||||||    
T  3671897 aaaaaaatgatgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttct 3671822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 7317712 - 7317633
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    ||||||| ||||| |||||||||| |||||||||  |||| ||||||  |||||||||||||||||||||| ||||||||    
T  7317712 aaaacaacgacgtgtcatgttttagtttgttgttagtaaggatgataggttaggttcgttcctacacaaaagtttctctt 7317633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 7317836 - 7317902
Alignment:
Q  31 tcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctta 97  Q
    |||||||||||||| |||||| |||| ||||||  |||||||||||||||||||| |||||||||||    
T  7317836 tcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctta 7317902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 31470785 - 31470841
Alignment:
Q  37 tttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||    
T  31470785 tttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaaaaatttctc 31470841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 38086035 - 38085967
Alignment:
Q  25 gacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||| ||||||||||||||||||||| |||||||||||  |||| ||||||||||||||| ||||||||    
T  38086035 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttagtttcgttcctacacaagaatttctc 38085967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 2059567 - 2059490
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||||| || |||| ||||| |||||||||| |||| ||||||  |||||||||||||||| ||| ||||||||    
T  2059567 aaaacaatgaagtgtcatattttagtttgttgtttgtaaggatgataggttaggttcgttcctacccaagaatttctc 2059490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 15330505 - 15330449
Alignment:
Q  37 tttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| |||||| |||||||||||  |||||||||||||||||||| ||||||||    
T  15330505 tttaatttattgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctc 15330449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 7298726 - 7298635
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| ||||||||    
T  7298726 aattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 7298635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 40521189 - 40521280
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||    
T  40521189 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 40521280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 19805587 - 19805680
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    |||||||| |||| ||| ||| ||||| ||||||||||||||||| |||||||| ||||||  ||| |||||||||||||||| ||||||||||    
T  19805587 aattattttaaaagaaagcaacgacgtgtcatgttttaatttgttatttataaggatgataggttaagttcgttcctacacaagaatttctctt 19805680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 28948993 - 28949069
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||| |||||||| |||||||||||||| |||||| |||||||||||  |||||||||||||||||||||||||||||    
T  28948993 aaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctc 28949069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 40521086 - 40521014
Alignment:
Q  23 atgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    ||||||| |||| |||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||||    
T  40521086 atgacgtgtcatattttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctctt 40521014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 7298840 - 7298902
Alignment:
Q  33 atgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    ||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||||    
T  7298840 atgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctctt 7298902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 16979605 - 16979681
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||| |||||||| ||||||||||||||||| ||| |||||||||||  |||| ||||||||||||||| ||||||||    
T  16979605 aaaaaaatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttagattcgttcctacacaagaatttctc 16979681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 46568028 - 46567960
Alignment:
Q  22 aatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaattt 91  Q
    |||||||| ||||||||||||||||||||| |||||||||||  ||| |||||||||||||||| |||||    
T  46568028 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaagttcgttcctacacaagaattt 46567960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 46568131 - 46568192
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatat 64  Q
    ||||||||  |||||||||||||| || ||||||||||||||||||||| ||||||||||||    
T  46568131 aattatttttaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatat 46568192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 19804874 - 19804797
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||||| || || || ||||| |||||||||||| |||| || |||  |||||||||||||||||||| ||||||||    
T  19804874 aaaacaacgatgtgtcgtgtttcaatttgttgtttgtaaggataataggttaggttcgttcctacacaagaatttctc 19804797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 36635411 - 36635502
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| ||||||||    
T  36635411 aattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 36635502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 19580482 - 19580576
Alignment:
Q  2 aaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    ||||||||| |||||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| ||||||||||    
T  19580482 aaattattttaaaataaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctatacaagaatttctctt 19580576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 33214534 - 33214442
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 95  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| |||||||||    
T  33214534 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 33214442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 36274210 - 36274126
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaa 87  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  36274210 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaaaa 36274126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 27073081 - 27073172
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||    
T  27073081 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 27073172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 11651093 - 11651000
Alignment:
Q  1 caaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||||| |||||||||||||||  |||||| |||||| ||||||||| |||||||||||| |||||||||||| || |||| ||||||||    
T  11651093 caaattattttaaaataaaacaatgatatatcatattttaaattgttgtttgtaagaatgatatgttaggttcgttcataaacaagaatttctc 11651000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 33219149 - 33219072
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||||||| |||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||    
T  33219149 aaaacaatgacgaatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33219072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 27072974 - 27072912
Alignment:
Q  33 atgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 95  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||||||||||| |||||||||    
T  27072974 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctct 27072912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 33214626 - 33214704
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 95  Q
    ||||||| ||||| ||||||||||||||||||||| ||||  |||||  |||||||||||||||||||| |||||||||    
T  33214626 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctct 33214704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 10598885 - 10598810
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttc 92  Q
    ||||||| ||||| ||||||||||||||||||||| |||  ||||||  |||||||||||||||||||| ||||||    
T  10598885 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttc 10598810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 36274312 - 36274391
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    ||||||| ||||| ||||||||||||||||||||| |||  ||||||  |||| |||||||||||| || ||||||||||    
T  36274312 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttagattcgttcctacataagaatttctctt 36274391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 10599000 - 10599062
Alignment:
Q  32 catgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||| | |||||| ||||||||    
T  10599000 catgttttaatttgttgtttgtaaggatgatatgttaggttcgtttccacacaagaatttctc 10599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 36635305 - 36635241
Alignment:
Q  26 acgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaattt 91  Q
    |||| ||||||||||||||||||||| ||| |||||||  |||||||||||||||||||| |||||    
T  36635305 acgtgtcatgttttaatttgttgtttgtaacaatgata-gttaggttcgttcctacacaagaattt 36635241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 28217691 - 28217786
Alignment:
Q  2 aaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctta 97  Q
    ||||||||| ||||||||||||||| || ||||||||| ||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||    
T  28217691 aaattattttaaaataaaacaatgatgtgtcatgttttgatttgttgtttgtaagaatgatatgttaggttcgttcctacacaataatttctctta 28217786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 50893054 - 50892963
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||| |||||||||||||||||    
T  50893054 aattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaagttcgttgctacacaaaaatttctc 50892963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 23346512 - 23346418
Alignment:
Q  1 caaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 95  Q
    |||||||||| ||||||||| |||||||| |||||||||||||| |||||| |||||||||||| |||||||||||||||||||| |||||||||    
T  23346512 caaattattttaaaataaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctct 23346418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 48871409 - 48871501
Alignment:
Q  2 aaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||||||| ||||||||||||||||||   ||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||    
T  48871409 aaattattttaaaataaaacaatgacgtgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 48871501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 41833965 - 41833874
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| ||||||||| |||||||| ||||||||||||||||||| | ||||||||||||||||| |||||| ||| |||| ||||||||    
T  41833965 aattattttaaaataaaataatgacgtgtcatgttttaatttgttgtgtgtaagaatgatatattagattcgtttctatacaagaatttctc 41833874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 50905086 - 50904992
Alignment:
Q  1 caaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatg--atatattaggttcgttcctacacaaaaatttct 93  Q
    ||||| |||| |||||||||||||||||| ||||||||||| ||||||||| ||| ||||  ||||||||||||||||||||||||| |||||||    
T  50905086 caaataattttaaaataaaacaatgacgtgtcatgttttaacttgttgtttgtaaaaatgatatatattaggttcgttcctacacaagaatttct 50904992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 39669231 - 39669321
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttct 93  Q
    |||||||| ||||||||||||| |||| ||||||||||||||||| ||| |||||||||||| ||| ||||||| |||||||| |||||||    
T  39669231 aattattttaaaataaaacaataacgtgtcatgttttaatttgttctttgtaagaatgatatgttaagttcgtttctacacaagaatttct 39669321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 28217606 - 28217527
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctta 97  Q
    |||| |||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||||||||    
T  28217606 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-attaggttcgttcctacacaggaatttctctta 28217527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 10227803 - 10227712
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||||||| |||| ||| ||  |||||||||||||||||||| ||||||||    
T  10227803 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctc 10227712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 50905104 - 50905175
Alignment:
Q  22 aatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttct 93  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||| ||||||  |||||||||||||||    
T  50905104 aatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttagattcgtttttacacaaaaatttct 50905175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 7062099 - 7062037
Alignment:
Q  2 aaattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatat 64  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  7062099 aaattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatat 7062037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 7062184 - 7062262
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    |||| |||||||| |||| |||||||||||||||| ||| |||||||  |||||||||||||||||||||||||||||||    
T  7062184 aaaaaaatgacgtgtcatattttaatttgttgtttgtaaaaatgatag-ttaggttcgttcctacacaaaaatttctctt 7062262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 10227899 - 10227978
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctctt 96  Q
    |||| ||||| || ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||||    
T  10227899 aaaataatgatgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 10227978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 26552165 - 26552256
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| |||| ||||||| ||||| |||| |||||||||||||||| |||| ||||||  ||||||||| |||||||||| ||||||||    
T  26552165 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgatcctacacaagaatttctc 26552256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 19059451 - 19059378
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatt 90  Q
    ||||||| ||||| ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||    
T  19059451 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 19059378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 48752586 - 48752657
Alignment:
Q  22 aatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||||||| ||||||||||||||||||||| |||||||||||  |||||||||||| ||||||| ||||||||    
T  48752586 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 48752657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 19059551 - 19059634
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaa 86  Q
    |||||||| |||| ||||||| || || |||| |||||||||||| |||||||| ||||||  |||||||||||||||||||||    
T  19059551 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttctttataaggatgataggttaggttcgttcctacacaaa 19059634  T

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Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 48871323 - 48871247
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||| ||||| || ||||||||||||||||| ||| |||||||||||  |||||||||||||||||||| ||||||||    
T  48871323 aaaaaaatgatgtgtcatgttttaatttgttatttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 48871247  T

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Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 50893150 - 50893226
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||| ||||| || ||||||||||||||||||||| ||| |||||||  |||||||||||||||||||| ||||||||    
T  50893150 aaaaaaatgatgtgtcatgttttaatttgttgtttgtaataatgata-gttaggttcgttcctacacaagaatttctc 50893226  T

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Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 42180641 - 42180571
Alignment:
Q  23 atgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||||| ||||||||||||||||||||| ||| |||| ||  |||||||||||||||||||| ||||||||    
T  42180641 atgacgtgtcatgttttaatttgttgtttgtaataatgcta-gttaggttcgttcctacacaagaatttctc 42180571  T

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Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 4156968 - 4156892
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    |||| |||||||| |||||||||||||| || ||| |||||||||||  |||||||| ||||||||||| ||||||||    
T  4156968 aaaaaaatgacgtgtcatgttttaatttattatttgtaagaatgata-gttaggttccttcctacacaagaatttctc 4156892  T

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Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 42180745 - 42180806
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatat 64  Q
    |||||||| ||||||||| ||||| || |||||||||| |||||||||| ||||||||||||    
T  42180745 aattattttaaaataaaataatgatgtgtcatgttttagtttgttgtttgtaagaatgatat 42180806  T

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Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 23346608 - 23346675
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaa 85  Q
    |||| |||||| | |||||||||||||| |||||| |||||||||||  ||||||||||||||||||||    
T  23346608 aaaaaaatgacatgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaa 23346675  T

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Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 41834069 - 41834139
Alignment:
Q  23 atgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||||| ||||||||||||||||||||| ||| |||| ||  ||| |||||||||||||||| ||||||||    
T  41834069 atgacgtgtcatgttttaatttgttgtttgtaataatgcta-gttatgttcgttcctacacaagaatttctc 41834139  T

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Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 26552067 - 26551992
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttc 92  Q
    ||||||| |||||  ||| ||||||||| |||||| |||| ||||||  |||| ||||||||||||||| ||||||    
T  26552067 aaaacaacgacgtgccatattttaattttttgtttgtaaggatgataggttagattcgttcctacacaagaatttc 26551992  T

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Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 39669133 - 39669087
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgata 63  Q
    |||| ||||||||||||| ||||||||| |||||| |||||||||||    
T  39669133 aaaaaaatgacgtatcatattttaatttattgtttgtaagaatgata 39669087  T

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Target: scaffold0140 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 15929 - 15846
Alignment:
Q  12 aaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctct 95  Q
    |||| |||| ||| |||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||    
T  15929 aaaaaaaaataataacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctct 15846  T

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Target: scaffold0214 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 11814 - 11891
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||||| ||||| ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||    
T  11814 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 11891  T

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Target: scaffold0214; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 11717 - 11630
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatt 90  Q
    |||||||| |||| |||||||||| || |||| |||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||    
T  11717 aattattttaaaagaaaacaatgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 11630  T

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Target: scaffold0135 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 37523 - 37446
Alignment:
Q  17 aaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgttcctacacaaaaatttctc 94  Q
    ||||||| ||||| ||||||||||||||||||||| |||| ||| ||   ||||||||||||||||||| ||||||||    
T  37523 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 37446  T

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Target: scaffold0135; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 37619 - 37691
Alignment:
Q  3 aattatttaaaaataaaacaatgacgtatcatgttttaatttgttgtttataagaatgatatattaggttcgt 75  Q
    |||||||| |||| ||||||| |||||| |||||||||||||||||||| |||| ||||||  ||||||||||    
T  37619 aattattttaaaagaaaacaacgacgtagcatgttttaatttgttgtttgtaaggatgataggttaggttcgt 37691  T

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