View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3269_high_3 (Length: 334)
Name: NF3269_high_3
Description: NF3269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3269_high_3 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
| [»] chr5 (6 HSPs) |
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|
Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 5284182 - 5283862
Alignment:
| Q |
14 |
aaaatgacattagcacatcagtttttgggtgatatataccaaaacaaatcacataatgaccaagataaatgtaaacgaaaagtatctaataatatttata |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5284182 |
aaaatgacattagcacatcagtttttgggtgatatataccaaaaccaatcacataatgatcaagataaatataaacgaaaagtatctaataatatttata |
5284083 |
T |
|
| Q |
114 |
tattcaagtatatcaaaataataaatagaggagaagaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgatttt |
213 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5284082 |
tactcaagtatatcaaaataataaatagaggagaagaatacttacacatgcgctgaaatttctctttaagttcagttttgtgttcactgtttgtgatttt |
5283983 |
T |
|
| Q |
214 |
aaagtaaaagtccggataagtgctttgttcaacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagcctta |
313 |
Q |
| |
|
||||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||| ||| |
|
|
| T |
5283982 |
aaagtaaaaatcaggatacgtgctttgttcaacacaatttgctggatttgcagtcccaatggccaagatggttgcagggccttctgccctttgagcttta |
5283883 |
T |
|
| Q |
314 |
cgaatttcagacacactcacc |
334 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
5283882 |
cgaatttcagacacactcacc |
5283862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 5289947 - 5290265
Alignment:
| Q |
16 |
aatgacattagcacatcagtttttgggtgatatataccaaaacaaatcacataatgaccaagataaatgtaaacgaaaagtatctaataatatttatata |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
5289947 |
aatgacattagcacatcagtttttgggtaatatataccaaaaccaatcacataatgaccaagataaatgtaaacgaaaagtatctaaaaatatttttata |
5290046 |
T |
|
| Q |
116 |
ttcaagtatatcaaaataataaatagaggagaagaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaa |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
5290047 |
ctcaagtttatcaaaataataaatagaggagaagaatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaa |
5290146 |
T |
|
| Q |
216 |
agtaaaagtccggataagtgctttgttcaacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacg |
315 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |||||||| ||||| |
|
|
| T |
5290147 |
agtaaaaatcaggataagtgctttgttcaacacaatttgctggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttgagctttacg |
5290246 |
T |
|
| Q |
316 |
aatttcagacacactcacc |
334 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5290247 |
aatttcagacacactcacc |
5290265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 5302368 - 5302050
Alignment:
| Q |
16 |
aatgacattagcacatcagtttttgggtgatatataccaaaacaaatcacataatgaccaagataaatgtaaacgaaaagtatctaataatatttatata |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
5302368 |
aatgacattagcacatcagtttttgggtaatatataccaaaaccaatcacataatgaccaagataaatgtaaacgaaaagtatctaaaaatatttttata |
5302269 |
T |
|
| Q |
116 |
ttcaagtatatcaaaataataaatagaggagaagaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaa |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
5302268 |
ctcaagtttatcaaaataataaatagaggagaagaatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaa |
5302169 |
T |
|
| Q |
216 |
agtaaaagtccggataagtgctttgttcaacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacg |
315 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |||||||| ||||| |
|
|
| T |
5302168 |
agtaaaaatcaggataagtgctttgttcaacacaatttgctggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttgagctttacg |
5302069 |
T |
|
| Q |
316 |
aatttcagacacactcacc |
334 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5302068 |
aatttcagacacactcacc |
5302050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 76 - 334
Target Start/End: Complemental strand, 5314762 - 5314504
Alignment:
| Q |
76 |
agataaatgtaaacgaaaagtatctaataatatttatatattcaagtatatcaaaataataaatagaggagaagaatacttacacatgcgctgaaatttc |
175 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5314762 |
agataaatgtaaacgaaaagtatctaaaaatatttatatactcaagtatatcaaaataataaatagaggagaagaatacttacacatgcgctgaaatttc |
5314663 |
T |
|
| Q |
176 |
tcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaatttgctggatttgcagtaccaatgg |
275 |
Q |
| |
|
||||| |||||| |||||||||||| ||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5314662 |
tctttgagttcaactttgtgttcactatttgtaattttaaagtaaaaatcaggatatgtgctttgttcaacacaatttgctggatttgcagtaccaatgg |
5314563 |
T |
|
| Q |
276 |
ccaaaatggttgcaggaccttctgctctttgagccttacgaatttcagacacactcacc |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5314562 |
ccaaaatggttgcaggaccttctgctctttgagccttacgaatttcagacacactcacc |
5314504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 78 - 334
Target Start/End: Complemental strand, 5309946 - 5309687
Alignment:
| Q |
78 |
ataaatgtaaacgaaaagtatctaataatatttatatattcaagtatatcaaaataataa---atagaggagaagaatacttacacatgcgctgaaattt |
174 |
Q |
| |
|
||||||||||| | ||||||||||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5309946 |
ataaatgtaaaagtaaagtatctaaaaatatttttatactcaagtatatcaaaataataataaatagaggagaagaatacttacacatgcgctgaaattt |
5309847 |
T |
|
| Q |
175 |
ctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaatttgctggatttgcagtaccaatg |
274 |
Q |
| |
|
||| || |||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5309846 |
ctccttaagttcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacaatttgctggatttgcagtaccaatg |
5309747 |
T |
|
| Q |
275 |
gccaaaatggttgcaggaccttctgctctttgagccttacgaatttcagacacactcacc |
334 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5309746 |
gccaaaatagttgcaggaccttctgctctttgagcattacgaatttcagacacactcacc |
5309687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 153 - 334
Target Start/End: Complemental strand, 1504534 - 1504353
Alignment:
| Q |
153 |
acttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaatt |
252 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||| || || ||||| |||||||||||||||||||| |
|
|
| T |
1504534 |
acttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttcaacacaatt |
1504435 |
T |
|
| Q |
253 |
tgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaatttcagacacactcacc |
334 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
1504434 |
tggtggatttgcagtgccaatggccaaaatggttgcaggaccttctgctctctgagccttgcgaatttcagatacactcacc |
1504353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 151 - 334
Target Start/End: Complemental strand, 1491772 - 1491589
Alignment:
| Q |
151 |
atacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaa |
250 |
Q |
| |
|
||||||||||||||| |||||||| ||||| || |||||||||||||| || |||||||||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
1491772 |
atacttacacatgcgttgaaatttttctttgagctcagttttgtgttcgctatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacag |
1491673 |
T |
|
| Q |
251 |
tttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaatttcagacacactcacc |
334 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
1491672 |
tttgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccctttgagccttgcgaatttcagatacactcacc |
1491589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 152 - 334
Target Start/End: Complemental strand, 1481881 - 1481699
Alignment:
| Q |
152 |
tacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaat |
251 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||| ||| || |||||||||||||||||||||||||| || ||||| ||||||||||||||||| | |
|
|
| T |
1481881 |
tacttacacatgcgttgaaatttttctttgagttcgactttatgctcactgtttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacagt |
1481782 |
T |
|
| Q |
252 |
ttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaatttcagacacactcacc |
334 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
1481781 |
ttgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccctttgagccttgcgaatttcagatacactcacc |
1481699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 128 - 334
Target Start/End: Complemental strand, 1477794 - 1477588
Alignment:
| Q |
128 |
aaaataataaatagaggagaagaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccg |
227 |
Q |
| |
|
||||||| | ||||| || ||||||||||||||||||| |||||||| ||||| |||||| |||||| ||||||||||||||||| |||||||| || | |
|
|
| T |
1477794 |
aaaataaaagatagaagaaaagaatacttacacatgcgttgaaatttttctttaagttcaactttgtgctcactgtttgtgattttgaagtaaaaatcag |
1477695 |
T |
|
| Q |
228 |
gataagtgctttgttcaacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaatttcagacac |
327 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||||||| |||||||||| ||||| ||||| |||||||| || |||||||| ||||||||||| || |
|
|
| T |
1477694 |
gatatgtgctttgttcaacacagttggctggatttgcagtgccaatggccatgatggtggcagggccttctgccctctgagccttgcgaatttcagatac |
1477595 |
T |
|
| Q |
328 |
actcacc |
334 |
Q |
| |
|
||||||| |
|
|
| T |
1477594 |
actcacc |
1477588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 147 - 300
Target Start/End: Complemental strand, 1485624 - 1485469
Alignment:
| Q |
147 |
aagaatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaa--agtccggataagtgctttgttca |
244 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | |||| || ||||| || || |||| |||| | ||||| | | || ||||| |||||||||||| |
|
|
| T |
1485624 |
aagaatacttacaaatgcgctgaaatttctctctgagttgcgtcttgtgctcgctatttgcgattctgaagtatagaaatcaggatatgtgctttgttca |
1485525 |
T |
|
| Q |
245 |
acacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgc |
300 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||| ||| ||||||| |||||||| |
|
|
| T |
1485524 |
acacaatttggtggatttgcagttcctatggccaagatgattgcagggccttctgc |
1485469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 152 - 324
Target Start/End: Complemental strand, 1496981 - 1496809
Alignment:
| Q |
152 |
tacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaat |
251 |
Q |
| |
|
|||| ||| |||||||| ||||||| ||||| |||||| ||||| ||| ||||||||| | | || || | || ||||| ||||||||||||| ||||| |
|
|
| T |
1496981 |
tactaacatatgcgctggaatttcttttttaattcagtcttgtgctcattgtttgtgactctgaaatagagatcaggatatgtgctttgttcaatacaat |
1496882 |
T |
|
| Q |
252 |
ttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaatttcaga |
324 |
Q |
| |
|
||| |||||||||||| ||||| || || || |||| ||| |||||||| ||||||||| | ||||||||||| |
|
|
| T |
1496881 |
ttgttggatttgcagtgccaatagctaagatagttgtagggccttctgccctttgagcccttcgaatttcaga |
1496809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 8e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 150 - 330
Target Start/End: Complemental strand, 44128351 - 44128171
Alignment:
| Q |
150 |
aatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacaca |
249 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| || || ||||| ||||||||||||||||| |
|
|
| T |
44128351 |
aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca |
44128252 |
T |
|
| Q |
250 |
atttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaatttcagacacact |
330 |
Q |
| |
|
||| ||||| |||||||| |||||||| |||||||||||||| |||||||| |||||||| || ||||||||||||||||| |
|
|
| T |
44128251 |
attggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacact |
44128171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 150 - 330
Target Start/End: Complemental strand, 44132556 - 44132376
Alignment:
| Q |
150 |
aatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacaca |
249 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| || || ||||| ||||||||||||||||| |
|
|
| T |
44132556 |
aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca |
44132457 |
T |
|
| Q |
250 |
atttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaatttcagacacact |
330 |
Q |
| |
|
||| ||||| |||||||| |||||||| |||||||||||||| |||||||| |||||||| || ||||||||||||||||| |
|
|
| T |
44132456 |
attggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacact |
44132376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 150 - 330
Target Start/End: Complemental strand, 44140978 - 44140798
Alignment:
| Q |
150 |
aatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacaca |
249 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| || || ||||| ||||||||||||||||| |
|
|
| T |
44140978 |
aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca |
44140879 |
T |
|
| Q |
250 |
atttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaatttcagacacact |
330 |
Q |
| |
|
||| ||||| |||||||| |||||||| |||||||||||||| |||||||| |||||||| || ||||||||||||||||| |
|
|
| T |
44140878 |
attggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacact |
44140798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 150 - 327
Target Start/End: Original strand, 24165436 - 24165613
Alignment:
| Q |
150 |
aatacttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacaca |
249 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||| |||| | ||||| || |||||||||| | ||||||| || || ||||| ||||||||||||||||| |
|
|
| T |
24165436 |
aatacttacaaatgcgttgaaatttttctttgagtttgatcttgtgctcgctgtttgtgactctaaagtagaaatcaggatatgtgctttgttcaacaca |
24165535 |
T |
|
| Q |
250 |
atttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaatttcagacac |
327 |
Q |
| |
|
|||| |||||||||||| ||||||||||| || |||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
24165536 |
gtttggtggatttgcagtgccaatggccaagatagttgcagggccttctgccctttgagccttacgaatttcagacac |
24165613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 267
Target Start/End: Original strand, 37863716 - 37863829
Alignment:
| Q |
154 |
cttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaattt |
253 |
Q |
| |
|
||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||| ||||||||||| ||||| || || || |||||||| ||| |
|
|
| T |
37863716 |
cttacacatgcgctggaatttttctctgagttcagttttgtgttcactgtttgtgatacggaagtaaaagtcaggatatgtactctgatcaacacagttt |
37863815 |
T |
|
| Q |
254 |
gctggatttgcagt |
267 |
Q |
| |
|
||||||||||| |
|
|
| T |
37863816 |
tgaggatttgcagt |
37863829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 37859726 - 37859782
Alignment:
| Q |
154 |
cttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgat |
210 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||| || ||||||||||||||||| |
|
|
| T |
37859726 |
cttacacatgcgctgaaatttttctttgagctcagtcttatgttcactgtttgtgat |
37859782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 39029691 - 39029635
Alignment:
| Q |
154 |
cttacacatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgat |
210 |
Q |
| |
|
||||||||||||||||||||| ||||| || || || ||||| ||||| |||||||| |
|
|
| T |
39029691 |
cttacacatgcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgat |
39029635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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