View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3269_high_4 (Length: 289)
Name: NF3269_high_4
Description: NF3269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3269_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 30670820 - 30670550
Alignment:
| Q |
19 |
aaatatgtgcttgcttcttttaagttctagctagctgcagtcttttccttttgattcgcttaagataaactgttctctttgacaattaattatccattaa |
118 |
Q |
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| T |
30670820 |
aaatatgtgcttgcttcttttaagttctagctagctgcagtcttttccttttgattcgcttaagataaactgttctctttgacaattaattatccattaa |
30670721 |
T |
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| Q |
119 |
ttcaaatattgttgttcttcatcctgcagatcaggttcattttatatttagctgtgtcactttcagataaacatttaacaatccttttaaaattatattt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30670720 |
ttcaaatattgttgttcttcatcctgcagatcaggttcattttatatttagctgtgtcactttcagataaaaatttaacaatccttttaaaattatattt |
30670621 |
T |
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| Q |
219 |
aggagaaatattcacaagaaatgcatgttcaaaaatgaaacatataagtttacattatttcctatctacat |
289 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
30670620 |
aggagaaatattcacaagaaatgcatgttcaaaaaggaaacatataagtttacattattttctatctacat |
30670550 |
T |
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