View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3269_low_1 (Length: 726)
Name: NF3269_low_1
Description: NF3269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3269_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 663; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 11 - 705
Target Start/End: Complemental strand, 2185245 - 2184551
Alignment:
| Q |
11 |
catagggtggtggactgggaaagttgacatggttgggtggtggccgcaaagtctatgctatctgaatatcttgatttgtatcacgataactttattttat |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
2185245 |
catagggtggtggaccgggaaagttgacatggttgggtggtggctgcaaagtctatgctatctgaatatcttgatctatatcacgataacgttattttat |
2185146 |
T |
|
| Q |
111 |
gttttgttatacaaataataacttatacataaaaacttacatgatacacacttatattacaagtgcttaattaagttattaattcaaggctgggaattca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2185145 |
gttttgttatacaaataataacttatacataaaaacttacatgatacacacttatattacaagtgcttaattaagttattaattcaaggctgggaattca |
2185046 |
T |
|
| Q |
211 |
gaagaggaatgctctgctcattcctgaaaaagttttggggatcaaattttgtcttaatttgggccaaacgcttaaagtttcccttaaagtacttgatgcc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2185045 |
gaagaggaatgctctgctcattcctgaaaaagttttggggatcaaattttgtcttaatttgggccaaacgcttaaagtttcccttaaagtacttgatgcc |
2184946 |
T |
|
| Q |
311 |
ccaaacacttgcttctgagtagcttgtgttgtcatgcttgttgctacctaaatcaagatccctatagttgtaatatgcagctcttggagactttgaaaca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2184945 |
ccaaacacttgcttctgagtagcttgtgttgtcatgcttgttgctacctaaatcaagatccctatagttgtaatatgcagctcttggagactttgaaaca |
2184846 |
T |
|
| Q |
411 |
taaggagtcatgtatccataaagcattctcatccactttatatgcttgttggattcttcaatgctattcacttcccacttgacaaagtattgtatgttga |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2184845 |
taaggagtcatgtatccataaagcattctcatccactttatatgcttgttggattcttcaatgctattcacttcccacttgacaaagtattgtatgttga |
2184746 |
T |
|
| Q |
511 |
acaagtttccttttctatgtggaaaagggatttcagattctgaaatttcactcatttttccaccatatggctccattataagtaatgctgatgtgtcttc |
610 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2184745 |
acaagtttccttttctgtgaggaaaagggatttcagattctgaaatttcactcatttttccaccatatggctccattataagtaatgctgatgtgtcttc |
2184646 |
T |
|
| Q |
611 |
ttttagaagcattctccaaataccttctaaaccagcttctggtataggttcttttacataatcagacttggctatgaatgggcttttgtaggtta |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2184645 |
ttttagaagcattctccaaataccttctaaaccagcttctggtataggttcttttacataatcagacttagctatgaatgggcttttgtaggtta |
2184551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 164 - 705
Target Start/End: Complemental strand, 2153478 - 2152937
Alignment:
| Q |
164 |
atattacaagtgcttaattaagttattaattcaaggctgggaattcagaagaggaatgctctgctcattcctgaaaaagttttggggatcaaattttgtc |
263 |
Q |
| |
|
|||||| |||||||| |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2153478 |
atattaaaagtgcttgattaagttgttaattcaggggagggaattcagaagaggaatgctctgctcattcctgaaaaagttttggggatcaaattttgtc |
2153379 |
T |
|
| Q |
264 |
ttaatttgggccaaacgcttaaagtttcccttaaagtacttgatgccccaaacacttgcttctgagtagcttgtgttgtcatgcttgttgctacctaaat |
363 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2153378 |
ttaatttgtgccaaacgcttaaagtttcccttaaagtacttgatgccccaaacacttgcttctgagtagcttgtgttgtcatgcttgttgctacctaaat |
2153279 |
T |
|
| Q |
364 |
caagatccctatagttgtaatatgcagctcttggagactttgaaacataaggagtcatgtatccataaagcattctcatccactttatatgcttgttgga |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2153278 |
caagatccctatagttgtaatatgcagctcttggagactttgaaacataaggagtcatgtatccataaagcattctcatccactttatatgcttgttgga |
2153179 |
T |
|
| Q |
464 |
ttcttcaatgctattcacttcccacttgacaaagtattgtatgttgaacaagtttccttttctatgtggaaaagggatttcagattctgaaatttcactc |
563 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2153178 |
ttcttcaatactattcacttcccactggacaaagtattgtatgttgaacaagtttccttttctatgtggaaaagggatttcagattctgaaatttcattc |
2153079 |
T |
|
| Q |
564 |
atttttccaccatatggctccattataagtaatgctgatgtgtcttcttttagaagcattctccaaataccttctaaaccagcttctggtataggttctt |
663 |
Q |
| |
|
| | |||||||||| || ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
2153078 |
agtcttccaccataaggttccattataagtagtgctaatgtgtcttcttttagaagcattttccaaataccttctaaaccagtttctggtataggctctt |
2152979 |
T |
|
| Q |
664 |
ttacataatcagacttggctatgaatgggcttttgtaggtta |
705 |
Q |
| |
|
|||||||||| || || ||| |||||||||||||| |||||| |
|
|
| T |
2152978 |
ttacataatcggatttcgctttgaatgggcttttgaaggtta |
2152937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 145 - 704
Target Start/End: Complemental strand, 2177156 - 2176597
Alignment:
| Q |
145 |
acttacatgatacacacttatattacaagtgcttaattaagttattaattcaaggctgggaattcagaagaggaatgctctgctcattcctgaaaaagtt |
244 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||||||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2177156 |
acttacatgatacaagcttatactataagtgcttaattaagttttaaattcaggggagggaattcagaagaggaatgctctgctcattcctgaaaaagtt |
2177057 |
T |
|
| Q |
245 |
ttggggatcaaattttgtcttaatttgggccaaacgcttaaagtttcccttaaagtacttgatgccccaaacacttgcttctgagtagcttgtgttgtca |
344 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2177056 |
ttggggatcaaattttgtcttaatttgtgccaaacgcttaaagtttcccttaaagtacttgatgccccaaacacttgcttctgagtatcttgtgttgtca |
2176957 |
T |
|
| Q |
345 |
tgcttgttgctacctaaatcaagatccctatagttgtaatatgcagctcttggagactttgaaacataaggagtcatgtatccataaagcattctcatcc |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2176956 |
tgcttgttgctacctaaatcaagatccctatagttgtaatatgcagctcttggagactttgaaacataaggagtcatgtatccataaagcattctcatcc |
2176857 |
T |
|
| Q |
445 |
actttatatgcttgttggattcttcaatgctattcacttcccacttgacaaagtattgtatgttgaacaagtttccttttctatgtggaaaagggatttc |
544 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| |||| |||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
2176856 |
actttatatgtttgttggattcttcaatgctatttgtatcccacttaacaatatattgtatgttgtacatgtttccttttctatgtggaaaagggatttc |
2176757 |
T |
|
| Q |
545 |
agattctgaaatttcactcatttttccaccatatggctccattataagtaatgctgatgtgtcttcttttagaagcattctccaaataccttctaaacca |
644 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||| || ||||||||||||||||| |||| |||| ||||||||||||| |||||||||||| ||||||| |
|
|
| T |
2176756 |
agattctgaaatttcattcagtcttccaccataaggttccattataagtaatgcaaatgtttcttgttttagaagcattttccaaataccttgtaaacca |
2176657 |
T |
|
| Q |
645 |
gcttctggtataggttcttttacataatcagacttggctatgaatgggcttttgtaggtt |
704 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || || |||||| ||||||||||||| |
|
|
| T |
2176656 |
atttctggtataggctcttttacataatcagatttagccttgaatgagcttttgtaggtt |
2176597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 203 - 702
Target Start/End: Complemental strand, 2197638 - 2197139
Alignment:
| Q |
203 |
ggaattcagaagaggaatgctctgctcattcctgaaaaagttttggggatcaaattttgtcttaatttgggccaaacgcttaaagtttcccttaaagtac |
302 |
Q |
| |
|
|||||| || |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2197638 |
ggaatttagtagaggaatactctgctcattcctgaaaaagttttggggatcaaatattgtcttaatttgtgccaaacgcttaaagtttcccttaaagtac |
2197539 |
T |
|
| Q |
303 |
ttgatgccccaaacacttgcttctgagtagcttgtgttgtcatgcttgttgctacctaaatcaagatccctatagttgtaatatgcagctcttggagact |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2197538 |
ttgatgccccaaacacttgcttctgagtagcttgtgttaaaatgcttgttcctacctatatcaagatccctatagttgtaatatgcagctcttggagact |
2197439 |
T |
|
| Q |
403 |
ttgaaacataaggagtcatgtatccataaagcattctcatccactttatatgcttgttggattcttcaatgctattcacttcccacttgacaaagtattg |
502 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || |||||||||||||||| |||||||| |||||||||||||||||||||||||| || | |||||| |
|
|
| T |
2197438 |
ttgaaacataaggagtcatgtatctataaagttttttcatccactttatatgtttgttggactcttcaatgctattcacttcccacttaaccatgtattg |
2197339 |
T |
|
| Q |
503 |
tatgttgaacaagtttccttttctatgtggaaaagggatttcagattctgaaatttcactcatttttccaccatatggctccattataagtaatgctgat |
602 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2197338 |
tatgttgtacaagtttccttttctgtgtggaaaagggatttcagattctgaaatttcactcatttttccaccatatggctccattataagtaatgctaat |
2197239 |
T |
|
| Q |
603 |
gtgtcttcttttagaagcattctccaaataccttctaaaccagcttctggtataggttcttttacataatcagacttggctatgaatgggcttttgtagg |
702 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
2197238 |
gtgtcttcttttagaagcattttccaaataccttctaaaccagtttctggtataggcacttttacataatcagatttggctttgaatgggcttttgtagg |
2197139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 2153663 - 2153581
Alignment:
| Q |
97 |
taactttattttatgttttgttatacaaataataacttatacataaaaacttacatgatacacacttatattacaagtgcttaatta |
183 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| |||||| || ||||||||||||| |
|
|
| T |
2153663 |
taactttattttatcttttgttataca---cgtaacttatacataaacacttacatgatacacgcttata-tataagtgcttaatta |
2153581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 205 - 619
Target Start/End: Complemental strand, 35539523 - 35539109
Alignment:
| Q |
205 |
aattcagaagaggaatgctctgctcattcctgaaaaagttttggggatcaaattttgtcttaatttgggccaaacgcttaaagtttcccttaaagtactt |
304 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35539523 |
aatttagaagaggaataatctgctctttcctgaaaaagttttggggatcaaattttgtcttaatttgtgccaaacgcttaaagtttcccttaaagtactt |
35539424 |
T |
|
| Q |
305 |
gatgccccaaacacttgcttctgagtagcttgtgttgtcatgcttgttgctacctaaatcaagatccctatagttgtaatatgcagctcttggagacttt |
404 |
Q |
| |
|
|| |||| || |||||||| ||||||||||||||| | ||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35539423 |
catacccctaaaacttgcttatgagtagcttgtgttattatgcttgttccttcctatatcaagatccctatagttgtaatatgcagctcttggagacttt |
35539324 |
T |
|
| Q |
405 |
gaaacataaggagtcatgtatccataaagcattctcatccactttatatgcttgttggattcttcaatgctattcacttcccacttgacaaagtattgta |
504 |
Q |
| |
|
|||||||||| |||||||||| || | | || |||||||||||||||| | ||||| ||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
35539323 |
gaaacataagaagtcatgtatttattatgttttttcatccactttatatgtcttttggactcttcaatgctattcacttcccacttgaccatgtattgta |
35539224 |
T |
|
| Q |
505 |
tgttgaacaagtttccttttctatgtggaaaagggatttcagattctgaaatttcactcatttttccaccatatggctccattataagtaatgctgatgt |
604 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| |||||||||||| |||||||||| ||||| ||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
35539223 |
tgttgtacaagtttccttttcaatgtggaaaatggatttcagattttgaaatttcattcattcttccaccatatggttccattataagtaatgctaatgg |
35539124 |
T |
|
| Q |
605 |
gtcttcttttagaag |
619 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35539123 |
atcttcttttagaag |
35539109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 357 - 430
Target Start/End: Original strand, 11810593 - 11810666
Alignment:
| Q |
357 |
cctaaatcaagatccctatagttgtaatatgcagctcttggagactttgaaacataaggagtcatgtatccata |
430 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||||||| |||||| |||||||| ||||||||| |||| |
|
|
| T |
11810593 |
cctaaatcaaggtccctataattcaaatatgcagctcttggaccctttgatacataaggtgtcatgtatgcata |
11810666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 357 - 445
Target Start/End: Original strand, 11802849 - 11802937
Alignment:
| Q |
357 |
cctaaatcaagatccctatagttgtaatatgcagctcttggagactttgaaacataaggagtcatgtatccataaagcattctcatcca |
445 |
Q |
| |
|
|||| |||||| ||||||||||| ||||||| ||||||| |||||||||||||||| ||||||||| |||| | | |||||||||| |
|
|
| T |
11802849 |
cctatatcaaggtccctatagttcaaatatgctactcttgggcactttgaaacataaggtgtcatgtatgcatataaccttctcatcca |
11802937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 37758896 - 37758817
Alignment:
| Q |
15 |
gggtggtggactgggaaagttgacatggttgggtggtggccgcaaagtctatgctatctgaatatcttgatttgtatcac |
94 |
Q |
| |
|
|||||||||| || ||||| | |||| | || ||||||| ||||||||||||||||| |||| ||||||| |||||||| |
|
|
| T |
37758896 |
gggtggtggaatgagaaagctagcatgataggttggtggctgcaaagtctatgctatcagaatgtcttgatctgtatcac |
37758817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 517 - 580
Target Start/End: Complemental strand, 38146370 - 38146307
Alignment:
| Q |
517 |
ttccttttctatgtggaaaagggatttcagattctgaaatttcactcatttttccaccatatgg |
580 |
Q |
| |
|
|||| |||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38146370 |
ttccatttctatgtggaaaagggctatcagattctgaaaattcactcatttttccaccatatgg |
38146307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 362 - 415
Target Start/End: Complemental strand, 38059343 - 38059290
Alignment:
| Q |
362 |
atcaagatccctatagttgtaatatgcagctcttggagactttgaaacataagg |
415 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
38059343 |
atcaagatctctatagttaatatatgcagctcttggagactttgaaacaaaagg |
38059290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 415
Target Start/End: Original strand, 38061111 - 38061164
Alignment:
| Q |
362 |
atcaagatccctatagttgtaatatgcagctcttggagactttgaaacataagg |
415 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
38061111 |
atcaagatctctataattgatatatgcagctcttggtgactttgaaacaaaagg |
38061164 |
T |
|
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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 18011825 - 18011788
Alignment:
| Q |
161 |
cttatattacaagtgcttaattaagttattaattcaag |
198 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
18011825 |
cttatattataagtgcttaattaagttatttattcaag |
18011788 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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