View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3269_low_7 (Length: 254)

Name: NF3269_low_7
Description: NF3269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3269_low_7
NF3269_low_7
[»] chr1 (2 HSPs)
chr1 (1-243)||(30670242-30670492)
chr1 (78-170)||(25652313-25652404)
[»] chr8 (1 HSPs)
chr8 (76-172)||(11137252-11137347)
[»] chr6 (1 HSPs)
chr6 (94-170)||(11660831-11660906)
[»] chr5 (2 HSPs)
chr5 (76-173)||(316988-317087)
chr5 (76-165)||(10054662-10054750)
[»] chr4 (1 HSPs)
chr4 (77-172)||(41961624-41961718)
[»] chr3 (2 HSPs)
chr3 (112-197)||(50432527-50432612)
chr3 (112-172)||(5270598-5270657)
[»] chr7 (1 HSPs)
chr7 (112-172)||(1360056-1360115)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 30670492 - 30670242
Alignment:
Q  1 tatatatagacattctgatcatgtttatatgtgtttattgtgaatttggattcaaatcaaacaaataagctt--------ggaacaagtatcaataacaa 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  30670492 tatatatagacattctgatcatgtttatatgtgtttattgtgaatttggattcaaatcaaacaaataagcttacaggtgtggaacaagtatcaataacaa 30670393  T
Q  93 ccaataatcaaaaccacctcaagcaacaaaaacagatataggtctaatctagcaaactaagtgtaaagcaaaaccacaattatagcaagacaacaagata 192  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30670392 ccaataatcaaaaccacctcaagcaacaaaaacagatataggtttaatctagcaaaccaagtgtaaagcaaaaccacaattatagcaagacaacaagata 30670293  T
Q  193 aagagtgtggaggaaaaattataccatgatttgtttacctagttcttctca 243  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  30670292 aagagagtggaggaaaaattataccatgatttgtttacctagttcatctca 30670242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 25652404 - 25652313
Alignment:
Q  78 aagtatcaataacaaccaataatcaaaaccacctcaagcaacaaaaacagatataggtctaatctagcaaactaagtgtaaagcaaaaccaca 170  Q
    ||||||||||  ||| || |||||||||  | | |||| ||||| |||| || ||| ||||||||||||| ||||||||||||||||||||||    
T  25652404 aagtatcaattgcaatcattaatcaaaataatcacaagtaacaacaacaaatttagatctaatctagcaa-ctaagtgtaaagcaaaaccaca 25652313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 11137347 - 11137252
Alignment:
Q  76 acaagtatcaataacaaccaataatcaaaaccacctcaagcaacaaaaacagatataggtctaatctagcaaactaagtgtaaagcaaaaccacaat 172  Q
    |||||||||||| |||||| ||||||||||  ||| |||||||||| |||| || ||  ||||||||||||| | |||| ||||| |||||||||||    
T  11137347 acaagtatcaatgacaaccgataatcaaaataaccacaagcaacaataacatatctaaatctaatctagcaatc-aagtataaagaaaaaccacaat 11137252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 11660906 - 11660831
Alignment:
Q  94 caataatcaaaaccacctcaagcaacaaaaacagatataggtctaatctagcaaactaagtgtaaagcaaaaccaca 170  Q
    |||||||||||||   | |||||||||| ||||||| ||| ||||||||||| ||| ||||||||||||||||||||    
T  11660906 caataatcaaaacattcgcaagcaacaacaacagatctagatctaatctagc-aaccaagtgtaaagcaaaaccaca 11660831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 317087 - 316988
Alignment:
Q  76 acaagtatcaataacaaccaataatcaaaaccacctcaagcaacaaaaac---agatataggtctaatctagcaaactaagtgtaaagcaaaaccacaat 172  Q
    |||||||||| | ||||||||||| |||||  ||| |||||||||| |||   |||| ||| ||| ||||||||| | ||||||||||||||||||||||    
T  317087 acaagtatcagtgacaaccaataaccaaaataaccacaagcaacaacaacgacagatctagatcttatctagcaacc-aagtgtaaagcaaaaccacaat 316989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 10054662 - 10054750
Alignment:
Q  76 acaagtatcaataacaaccaataatcaaaaccacctcaagcaacaaaaacagatataggtctaatctagcaaactaagtgtaaagcaaaa 165  Q
    |||||||||||| ||||| |||||||||||  ||| || ||||||  |||| || ||| ||||||||||| ||| |||||||||||||||    
T  10054662 acaagtatcaatgacaactaataatcaaaataaccacatgcaacatcaacaaatctagatctaatctagc-aaccaagtgtaaagcaaaa 10054750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 41961718 - 41961624
Alignment:
Q  77 caagtatcaataacaaccaataatcaaaaccacctcaagcaacaaaaacagatataggtctaatctagcaaactaagtgtaaagcaaaaccacaat 172  Q
    ||||||||||| ||||||||||| |||||  ||  |||||||||| || |||| ||| ||||||||||  ||| | || |||||||||||||||||    
T  41961718 caagtatcaatgacaaccaataaccaaaaaaactacaagcaacaacaatagatctagatctaatctag-taaccaggtttaaagcaaaaccacaat 41961624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 50432527 - 50432612
Alignment:
Q  112 caagcaacaaaaacagatataggtctaatctagcaaactaagtgtaaagcaaaaccacaattatagcaa-gacaacaagataaagag 197  Q
    |||||||||| || |||| ||| || |||||||||| | ||||| |||||||||||||||| | | ||| |||||||||||||||||    
T  50432527 caagcaacaataatagatctagatccaatctagcaa-cgaagtggaaagcaaaaccacaatcaaaccaaagacaacaagataaagag 50432612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 5270657 - 5270598
Alignment:
Q  112 caagcaacaaaaacagatataggtctaatctagcaaactaagtgtaaagcaaaaccacaat 172  Q
    |||||||||| || |||| ||| ||||||||||| ||| |||||||| |||||||||||||    
T  5270657 caagcaacaacaatagatctagatctaatctagc-aaccaagtgtaatgcaaaaccacaat 5270598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 1360056 - 1360115
Alignment:
Q  112 caagcaacaaaaacagatataggtctaatctagcaaactaagtgtaaagcaaaaccacaat 172  Q
    |||||||||| ||||  | ||| |||||||||  |||||||||||||||||||||||||||    
T  1360056 caagcaacaacaacaattttagatctaatctaa-aaactaagtgtaaagcaaaaccacaat 1360115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University