View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3269_low_8 (Length: 247)
Name: NF3269_low_8
Description: NF3269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3269_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 25537652 - 25537434
Alignment:
| Q |
1 |
atgttctgtccctttccttcatatgaatgaatgtgttgccaaagagctaaatgaaattaagttaaagccccttgaagctgctagtccttttgctttgagg |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25537652 |
atgttctgtccctttccttcatatgaatgagtgtgttgccaaagagataaatgaaattaagttaaagccccttgaagttgctagtccttttgctttgagg |
25537553 |
T |
|
| Q |
101 |
attcgagagatagatgaaagtgattagatgagactttgagtaagggtgaatttcaaaccttttcagcttgttaaaaccgagatgaagaggtaacattcct |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25537552 |
attcgagagatagataaaagtgattagatgagactttgagtaagggtgaatttcaaaccttttcagcttgttaaaaccgagatgaagaggtaacattcct |
25537453 |
T |
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| Q |
201 |
caatgaaacaggttgctga |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
25537452 |
caatgaaacaggttgctga |
25537434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 25516966 - 25517072
Alignment:
| Q |
1 |
atgttctgtccctttccttcatatgaatgaatgtgttgccaaagagctaaatgaaattaagttaaagccccttgaagctgctagtccttttgctttgagg |
100 |
Q |
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||||||||||||||| |||| |||| ||| |||||||||||||||||||| |||| |||||||| | ||| |||| || |||||||| ||||||||| |
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| T |
25516966 |
atgttctgtcccttttcttcttatggctgagtgtgttgccaaagagctaaaggaaactaagttaaggacccatgaaactagaagtcctttggctttgagg |
25517065 |
T |
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| Q |
101 |
attcgag |
107 |
Q |
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||||||| |
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| T |
25517066 |
attcgag |
25517072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 25525128 - 25525063
Alignment:
| Q |
1 |
atgttctgtccctttccttcatatgaatgaatgtgttgccaaagagctaaatgaaattaagttaaa |
66 |
Q |
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|||| |||||||||| |||||||||| ||| |||||||||||||||||||| |||| ||||||||| |
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| T |
25525128 |
atgtcctgtcccttttcttcatatgactgagtgtgttgccaaagagctaaaggaaactaagttaaa |
25525063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 44461153 - 44461065
Alignment:
| Q |
2 |
tgttctgtccctttccttcatatgaatgaatgtgttgccaaagagctaaatgaaattaagttaaagccccttgaagctgctagtccttt |
90 |
Q |
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|||||||| ||||| ||||||||| ||| |||||||| || ||||| || ||| |||||||||||| |||||||||| ||||||||| |
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| T |
44461153 |
tgttctgttccttttcttcatatggctgagtgtgttgcaaaggagcttaaggaagctaagttaaagccacttgaagctggtagtccttt |
44461065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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