View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_high_11 (Length: 408)
Name: NF3270_high_11
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 34908540 - 34908159
Alignment:
| Q |
11 |
catcatcaaaacccatcttaaaaacacaacaatgcactttcttcccatcaacaagacttacacaagctttcaatataggaggaaaagtataaaaatcagg |
110 |
Q |
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| T |
34908540 |
catcctcaaaacccatcttaaaaacacaacaatgcactttcttcccatcaacaagacttacacaagctttcaatataggaggaaaagtataaaaatcagg |
34908441 |
T |
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| Q |
111 |
tcgtaaatgaccaccaccacacattgaaaacaattgattgacacaattcatagcttcatggtattttccaaatcgaacataagcagatataattgaattc |
210 |
Q |
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| T |
34908440 |
tcgtaaatgaccaccaccacacattgaaaacaattgattgacacaattcatagcttcatggtattttccaaatcgaacataagcagatataattgaattc |
34908341 |
T |
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| Q |
211 |
catgaaaagatattctttttgtgaatataatcaaatgtggaacgagataatgaaatatcaccatgagtaacatataaattaataagctttgttgataaaa |
310 |
Q |
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| T |
34908340 |
catgaaaagatattctttttgtgaatataatcaaatgtggaacgagataatgaaatatcaccatgagtgacatataaattaataagctttgttgataaaa |
34908241 |
T |
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| Q |
311 |
caatgttttgagattttccaaataccagaagaagagcatgaagcttcttagtagcattaacattgacgcaggagttgaataa |
392 |
Q |
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| T |
34908240 |
caatgttttgagattttccaaataccagaagaagagcatgaagcttcttagtagcattaacattgacgcaggagttgaataa |
34908159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 356
Target Start/End: Complemental strand, 1815919 - 1815821
Alignment:
| Q |
258 |
taatgaaatatcaccatgagtaacatataaattaataagctttgttgataaaacaatgttttgagattttccaaataccagaagaagagcatgaagctt |
356 |
Q |
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| T |
1815919 |
taatgagatatatccaagagtgacatacatattactaagctctgtagatagaacaacgttttgggattttcccaacaccacaagaagagcatgaagctt |
1815821 |
T |
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