View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_high_12 (Length: 365)
Name: NF3270_high_12
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 9 - 349
Target Start/End: Complemental strand, 13193576 - 13193236
Alignment:
| Q |
9 |
agcagagaccataagaccatcatcatcactatcatgatcattcaacaccttcttgattccatcaacaccttgaatccctctaacaaactcaacagcataa |
108 |
Q |
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| T |
13193576 |
agcagagaccataagaccatcatcatcactatcatgatcattcaacaccttcttgattccatcaacaccttgaatccctctaacaaactcaacagcataa |
13193477 |
T |
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| Q |
109 |
gcagaaccaaccataggatcttctccaggagtttcctgtcctctcccccacctaggatccctaaaaacattaacatttggagcccaaaaactcaacccag |
208 |
Q |
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| T |
13193476 |
gcagaaccaaccataggatcttctccaggagtttcctgtcctctcccccacctaggatccctaaaaacattaacatttggagcccaaaaactcaacccag |
13193377 |
T |
|
| Q |
209 |
cttgtcccacattaaacatagccctaccttcaacaccaacagcataaccaataagaaaccaaagagaacggttaaacgccgcggcggagacgataacttg |
308 |
Q |
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| T |
13193376 |
cttgtcccacattaaacatagccctaccttcaacaccaacagcataaccaataagaaaccaaagagaacggttaaacgccgcggcggagacgataacttg |
13193277 |
T |
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| Q |
309 |
agggaaatttgtagcagatttaactgatccattgaagttga |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
13193276 |
agggaaatttgtagcagatttaactgatccattgaagttga |
13193236 |
T |
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