View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_high_15 (Length: 348)
Name: NF3270_high_15
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 121 - 330
Target Start/End: Complemental strand, 10484369 - 10484160
Alignment:
| Q |
121 |
tgacaggtacaagagatggaacaataataattttaaagatgttattcttaatgtggatggtagttatcatggtactcctattaaaattgagtttggtggg |
220 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| || |||||||||||| |
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| T |
10484369 |
tgacaggtacaagagatggaacaataataattttacagatgttattcttaatgtggatggtagctatcatggtactcctgttagaaccgagtttggtggg |
10484270 |
T |
|
| Q |
221 |
gtcttgcgtaatgacataggtttattccttgcgggcttctccggttttattccaggttcaaatgacatcctgctaggtgagctttatgctgtgaacttgc |
320 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10484269 |
gtcttgcgtaatgacacaggtttattccttgcgggcttctccggttttattccaggttcaaatgacatcctgctaggtgagctttatgctgtgaacttgc |
10484170 |
T |
|
| Q |
321 |
ttgctattct |
330 |
Q |
| |
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|||||||||| |
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| T |
10484169 |
ttgctattct |
10484160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 67 - 310
Target Start/End: Complemental strand, 10470537 - 10470294
Alignment:
| Q |
67 |
ttctattgggtgcattgtaataaacttttctactcctactcctgctgttacgagtgacaggtacaagagatggaacaataataattttaaagatgttatt |
166 |
Q |
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|||||||| |||||||||||| |||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||| | ||||||| |
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| T |
10470537 |
ttctattgagtgcattgtaatcaacttttctacttatacttatgctgttacgactgacaggtacatcagatggaacaataataattttacaagtgttatt |
10470438 |
T |
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| Q |
167 |
cttaatgtggatggtagttatcatggtactcctattaaaattgagtttggtggggtcttgcgtaatgacataggtttattccttgcgggcttctccggtt |
266 |
Q |
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| T |
10470437 |
cttaatgtggatgatagctctcatggtactcctgttagaaacgggtttggtcgggtcttgtgtaatgacgcagatttatttcttgcgggcttctccggtt |
10470338 |
T |
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| Q |
267 |
ttattccaggttcaaatgacatcctgctaggtgagctttatgct |
310 |
Q |
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|||||||||||||| || ||| ||| |||||||||||| |||| |
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| T |
10470337 |
ttattccaggttcagattacaccctattaggtgagctttctgct |
10470294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 123 - 289
Target Start/End: Original strand, 38224312 - 38224478
Alignment:
| Q |
123 |
acaggtacaagagatggaacaataataattttaaagatgttattcttaatgtggatggtagttatcatggtactcctatta-aaattgagtttggtgggg |
221 |
Q |
| |
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||||||||| |||||||| ||||||||| || | || |||||||||||||||||||||||| |||| |||||||||| || |||| |||||||| | |
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| T |
38224312 |
acaggtacatcagatggaataataataatatttcgggtgctattcttaatgtggatggtagttagcatgacactcctattagaacttga-tttggtggag |
38224410 |
T |
|
| Q |
222 |
tcttgcgtaatgacataggtttattccttgcgggcttctccggttttattccaggttcaaatgacatc |
289 |
Q |
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| T |
38224411 |
tcttgcgcaatgactcaggtatattcattgcgggtttctctggtttcattccaggatcatttgacatc |
38224478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 310
Target Start/End: Complemental strand, 5204386 - 5204153
Alignment:
| Q |
78 |
gcattgtaataaacttttctactcctactcctgctgttacgagtgacaggtacaagagatggaac-aataataattttaaagatgttattcttaatgtgg |
176 |
Q |
| |
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|||||||||| |||| ||| || || || ||||| |||| | | ||||||||| |||||||| ||||| |||||| || || |||||||||||||| |
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| T |
5204386 |
gcattgtaatcaactattcaccttctgcttctgcttttacaactaacaggtacattagatggaaataataacaatttttcaggtgctattcttaatgtgg |
5204287 |
T |
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| Q |
177 |
atggtagttatcatggtactcctattaaaattgagtttggtggggtcttgcgtaatgacataggtttattccttgcgggcttctccggttttattccagg |
276 |
Q |
| |
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|||| |||| || ||| ||||||| |||| | ||||||||| |||||||||| | | |||| |||||||| | |||||||| ||| |||||||| |
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| T |
5204286 |
atggaagttgccacggttctcctatcaaaaccgggtttggtggagtcttgcgtactcatgcaggtatattcctttcaggcttctctagttggattccagg |
5204187 |
T |
|
| Q |
277 |
ttcaaatgacatcctgctaggtgagctttatgct |
310 |
Q |
| |
|
|||| |||||||| |||||||||| |||| |||| |
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| T |
5204186 |
ttcagatgacatcttgctaggtgatctttctgct |
5204153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 301
Target Start/End: Complemental strand, 51303384 - 51303192
Alignment:
| Q |
109 |
tgctgttacgagtgacaggtacaagagatggaacaataataattttaaagatgttattcttaatgtggatggtagttatcatggtactcctattaaaatt |
208 |
Q |
| |
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||||||||| | | ||||||||| |||||||| |||| |||||| || || |||||||||||||||||| |||| || |||| |||| ||||||| |
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| T |
51303384 |
tgctgttacaactaacaggtacatcagatggaaagataacaatttttcaggtgctattcttaatgtggatggaagttgtcttggttctccaattaaaacc |
51303285 |
T |
|
| Q |
209 |
gagtttggtggggtcttgcgtaatgacataggtttattccttgcgggcttctccggttttattccaggttcaaatgacatcctgctaggtgag |
301 |
Q |
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| T |
51303284 |
gggtttggtggagtcttgcgtgctgatgcaggtatattccttttgtgcttctttagttgcattccaggttcatatgacatcttgctaggtgag |
51303192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 38945514 - 38945615
Alignment:
| Q |
134 |
agatggaacaataataattttaaagatgttattcttaatgtggatggtagttatcatggtactcctattaaaattgagtttggtggggtcttgcgtaatg |
233 |
Q |
| |
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|||||||| ||||||||| || || || ||||||||||||||||||||||| |||| |||| ||||| || ||||||||||| ||||||||||||| |
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| T |
38945514 |
agatggaataataataatatttcaggtgctattcttaatgtggatggtagttgccatgacactcatattagaaccgagtttggtggagtcttgcgtaatg |
38945613 |
T |
|
| Q |
234 |
ac |
235 |
Q |
| |
|
|| |
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|
| T |
38945614 |
ac |
38945615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 166 - 310
Target Start/End: Complemental strand, 35061265 - 35061121
Alignment:
| Q |
166 |
tcttaatgtggatggtagttatcatggtactcctattaaaattgagtttggtggggtcttgcgtaatgacataggtttattccttgcgggcttctccggt |
265 |
Q |
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|||||| ||||||||||| | ||||||||||||| ||| || | |||||||||||||||||||||||||| ||||||||||||||| |||||||||| | |
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| T |
35061265 |
tcttaacgtggatggtagctgtcatggtactcctgttagaaccgggtttggtggggtcttgcgtaatgacacaggtttattccttgcaggcttctccgat |
35061166 |
T |
|
| Q |
266 |
tttattccaggttcaaatgacatcctgctaggtgagctttatgct |
310 |
Q |
| |
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|||||||||||||| |||| ||||||||||||||||||| |||| |
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| T |
35061165 |
tttattccaggttcggatgatatcctgctaggtgagctttctgct |
35061121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 43111959 - 43111903
Alignment:
| Q |
238 |
aggtttattccttgcgggcttctccggttttattccaggttcaaatgacatcctgct |
294 |
Q |
| |
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|||||||||||||| || |||||| ||||||||||||| ||| |||||||| |||| |
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| T |
43111959 |
aggtttattccttgtggacttctctagttttattccaggctcatatgacatcttgct |
43111903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 1929206 - 1929131
Alignment:
| Q |
160 |
tgttattcttaatgtggatggtagttatcatggtactcctattaaaattgagtttggtggggtcttgcgtaatgac |
235 |
Q |
| |
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|||| ||||||||||||||||||||| ||| |||||||||| || || || |||||| ||||||||||||||| |
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| T |
1929206 |
tgttgttcttaatgtggatggtagttgcgttggcactcctattagaactgggtctggtggagtcttgcgtaatgac |
1929131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 29339599 - 29339635
Alignment:
| Q |
239 |
ggtttattccttgcgggcttctccggttttattccag |
275 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| |
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| T |
29339599 |
ggtttattccttgcgggcttctatggttttattccag |
29339635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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