View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_high_19 (Length: 271)
Name: NF3270_high_19
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 44624804 - 44624565
Alignment:
| Q |
14 |
agactaaaccttgaacctgagaaacagagtcttctcaatcgccacactgaaaagcacttcaccgcgggtgaaatcgtccgtgacatcatcattggcgttt |
113 |
Q |
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| T |
44624804 |
agactaaaccttgaacctgagaaacagagccttctcaatcgccacactgaaaagcacttcaccgcgggtgaaatcgtccgtgacatcatcattggcgttt |
44624705 |
T |
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| Q |
114 |
ccgatggcctcaccgtccctttcgccctcgctgccggtctctctggcgccaatgctacttcttccatcgtcctcactgctggcatcgccgaagtcgccgc |
213 |
Q |
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| T |
44624704 |
ccgatggcctcaccgtccctttcgccctcgccgccggtctctctggcgccaatgctacttcttccatcgtcctcactgctggcatcgccgaagtcgccgc |
44624605 |
T |
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| Q |
214 |
cggcgccatctccatgggtctcggagggtaacactcttta |
253 |
Q |
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| T |
44624604 |
cggcgccatctccatgggtctcggagggtaacactcttta |
44624565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 44636053 - 44635824
Alignment:
| Q |
14 |
agactaaaccttgaacctgagaaacagagtcttctcaatcgccacactgaaaagcacttcaccgcgggtgaaatcgtccgtgacatcatcattggcgttt |
113 |
Q |
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||||||| |||||||||||||||||||| ||||||||| ||||||||| |||| |||||||| ||||| || |||||||||||||| || || | | |
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| T |
44636053 |
agactaacccttgaacctgagaaacagatccttctcaataaccacactgaggagcatttcaccgccggtgacatagtccgtgacatcattatcggtgcct |
44635954 |
T |
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| Q |
114 |
ccgatggcctcaccgtccctttcgccctcgctgccggtctctctggcgccaatgctacttcttccatcgtcctcactgctggcatcgccgaagtcgccgc |
213 |
Q |
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| || || ||||| || || ||||| || ||||||||||||||||||||||||| | | |||||| || |||||||||| ||||| |||||||| || || |
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| T |
44635953 |
ctgacggactcactgttccattcgctcttgctgccggtctctctggcgccaatgttgcctcttccgtcatcctcactgcaggcatagccgaagttgctgc |
44635854 |
T |
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| Q |
214 |
cggcgccatctccatgggtctcggagggta |
243 |
Q |
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| T |
44635853 |
aggcgccatctccatgggtctcggagggta |
44635824 |
T |
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