View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_high_22 (Length: 264)
Name: NF3270_high_22
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 29935843 - 29935607
Alignment:
| Q |
13 |
cagcacagatgcaaaggtttgttagcgacttctatcaacccaacaactaatattgtaaatgaatatgannnnnnnnnnnnnnnnna-actttacagaaag |
111 |
Q |
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| T |
29935843 |
cagcgcagatgcaaaggtttgttagcgacttctatcaacccaacaactaatattgtaaacgaatatgaattttttttctttttttttactttatgcaaag |
29935744 |
T |
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| Q |
112 |
tgttatgacaaatctagataaaagtaataagatcaatatctttctacattttttagcatcatactttatgagcatgaatcaaaagtgttacaagcatgtg |
211 |
Q |
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| T |
29935743 |
tgttatgacaaatctagataaaagtaataagatcaatatctttctacattttttagcatcatactttatgagcatgaatcaaaagtgttacaagcatgtg |
29935644 |
T |
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| Q |
212 |
ctctgtgtgcatttttgactcggttaaatgttatttt |
248 |
Q |
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| T |
29935643 |
ctctgtgtgcatttttgactcggttaaatgttatttt |
29935607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 109 - 245
Target Start/End: Original strand, 51158420 - 51158557
Alignment:
| Q |
109 |
aagtgttatgacaaatctagataaaagtaataagatcaatatctttctacattttttagcatcatactttatgagcatgaatcaaa--agtgttacaagc |
206 |
Q |
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| T |
51158420 |
aagtggtatgataaatctgaataaaagtaatcagatctacgcctttctacatttttgaa-atcatactttatgagcatgaaccatataagcgttacaagc |
51158518 |
T |
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| Q |
207 |
atgtgctctgtgtgcatttttgactcggttaaatgttat |
245 |
Q |
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| T |
51158519 |
atgtgctctgagtgcatttttgactcagctaaatgttat |
51158557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 51147315 - 51147401
Alignment:
| Q |
156 |
tacattttttagcatcatactttatgagcatgaatcaaaagtgttacaagcatgtgctctgtgtgcatttttgactcggttaaatgtt |
243 |
Q |
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| T |
51147315 |
tacattttttggcatcatgctttagaagcatgaaccgaa-gtgttgcaagcatgtgctctaagtgcacttttgactcggttaattgtt |
51147401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 51158332 - 51158377
Alignment:
| Q |
18 |
cagatgcaaaggtttgttagcgacttctatcaacccaacaactaat |
63 |
Q |
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| T |
51158332 |
cagatgctaaggtttgttagcgacttctgtcaaccaaataactaat |
51158377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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