View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_high_29 (Length: 253)
Name: NF3270_high_29
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_high_29 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 25908176 - 25907937
Alignment:
| Q |
16 |
atgaagctaagatg--ctagtttaccatagaactgaatccttgtcaaatctggcctcccgaatgaaacaccataacatttaacatttaagtggcatattg |
113 |
Q |
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| T |
25908176 |
atgaagctaagatgtgctagtttaccatataactgaatccttgtcaaatctggccttccgaatgaaacaccataacatttaacatttaagtggcatattg |
25908077 |
T |
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| Q |
114 |
aagttctgaataagtttgaaaaagaaaaacaattggaaaggaagaaaatttggcattcacgtgcatcgaaattatagacaatgcaatcaatagcttcaca |
213 |
Q |
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| T |
25908076 |
aagttctgaataagcttgaaaaagaaaaacaattggaaaggaagaaaatttggcattcacgtgcatcgaaattatagacaatgcaatcaatagcttcaca |
25907977 |
T |
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| Q |
214 |
cataaacagacaaagattacaatttataaaatggttttta |
253 |
Q |
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| T |
25907976 |
cataaacagacaaagattacaatttataaaatggttttta |
25907937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 40422766 - 40423006
Alignment:
| Q |
16 |
atgaagctaagatgctagtttaccatagaactgaatccttgtcaaatctggcctcccgaatgaaacaccataacatttaacatttaagtggcatattgaa |
115 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
40422766 |
atgaagctaagatgctagtttaccata--actgaatccttgtcaaatttggcctcccgaatgaaacaccataacaattaacatttaagttacatattgaa |
40422863 |
T |
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| Q |
116 |
gttctgaataagtttgaaaaagaaaaa-----caattggaaaggaagaaaatttggcattcacgtgcatcgaaattatagacaatgcaatcaatagcttc |
210 |
Q |
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| T |
40422864 |
gttctgaataagcttgaaaaagaaaaaaaaataaattggaaaggaagaaaatttggcattcacgtgcatcaaaattttagataatgcaatcaatagcttt |
40422963 |
T |
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| Q |
211 |
acacataaacagacaaagattacaatttataaaatggttttta |
253 |
Q |
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| T |
40422964 |
acacatatacagacaaggattacattttataaaatggttttta |
40423006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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