View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_high_3 (Length: 716)
Name: NF3270_high_3
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 676; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 676; E-Value: 0
Query Start/End: Original strand, 13 - 700
Target Start/End: Complemental strand, 34908846 - 34908159
Alignment:
| Q |
13 |
catcactatccaacccatgcttcaacacatgcaaatgaatcaacaccccattaacaacatcatccgattgtgcacaaacaggaagtatgctcgccaccgt |
112 |
Q |
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| T |
34908846 |
catcactatccaacccatgcttcaacacatgcaaatgaatcaacaccccattaataacatcatccgattgtgcacaaacaggaagtatgctcgccaccgt |
34908747 |
T |
|
| Q |
113 |
aatcgtatccatcttcaccccctcacctttcatcctattcaaaacacctaacgcccccgctgcatttccattctgacaaaaccccgaaatcatcgcattc |
212 |
Q |
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| T |
34908746 |
aatcgtatccatcttcaccccctcacctttcatcctattcaaaacacctaacgcccccgctgcatttccattctgacaaaaccccgaaatcatcgcattc |
34908647 |
T |
|
| Q |
213 |
caagaccccacatctttcaccggcatatcaacaaacaccttgagtgcaacatctaaaacaccataccgcgaatacaaatgaaccaaagaagcagcaacaa |
312 |
Q |
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| T |
34908646 |
caagaccccacatctttcaccggcatatcaacaaacaccttgtgtgcaacatctaaaacaccataccgcgaatacaaatgaaccaaagaagcagcaacaa |
34908547 |
T |
|
| Q |
313 |
atacatcatcctcaaaacccatcttaaaaacacaacaatgcactttcttcccatcaacaagacttacacaagctttcaatataggaggaaaagtataaaa |
412 |
Q |
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| T |
34908546 |
atacatcatcctcaaaacccatcttaaaaacacaacaatgcactttcttcccatcaacaagacttacacaagctttcaatataggaggaaaagtataaaa |
34908447 |
T |
|
| Q |
413 |
atcaggtcgtaaatgaccaccaccacacattgaaaacaattgattgacacaattcatagcttcatggtattttccaaatcgaacataagcagatataatt |
512 |
Q |
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| T |
34908446 |
atcaggtcgtaaatgaccaccaccacacattgaaaacaattgattgacacaattcatagcttcatggtattttccaaatcgaacataagcagatataatt |
34908347 |
T |
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| Q |
513 |
gaattccatgaaaagatattctttttgtgaatataatcaaatgtggaacgagataatgaaatatcaccatgagtaacatataaattaataagctttgttg |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34908346 |
gaattccatgaaaagatattctttttgtgaatataatcaaatgtggaacgagataatgaaatatcaccatgagtgacatataaattaataagctttgttg |
34908247 |
T |
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| Q |
613 |
ataaaacaatgttttgagattttccaaataccagaagaagagcatgaagcttcttagtagcattaacattgacgcaggagttgaataa |
700 |
Q |
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| T |
34908246 |
ataaaacaatgttttgagattttccaaataccagaagaagagcatgaagcttcttagtagcattaacattgacgcaggagttgaataa |
34908159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 566 - 664
Target Start/End: Complemental strand, 1815919 - 1815821
Alignment:
| Q |
566 |
taatgaaatatcaccatgagtaacatataaattaataagctttgttgataaaacaatgttttgagattttccaaataccagaagaagagcatgaagctt |
664 |
Q |
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|||||| |||| ||| |||| ||||| | |||| |||||| ||| |||| ||||| |||||| |||||||| || |||| |||||||||||||||||| |
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| T |
1815919 |
taatgagatatatccaagagtgacatacatattactaagctctgtagatagaacaacgttttgggattttcccaacaccacaagaagagcatgaagctt |
1815821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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