View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_high_31 (Length: 247)
Name: NF3270_high_31
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 124 - 244
Target Start/End: Complemental strand, 4150452 - 4150332
Alignment:
| Q |
124 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
223 |
Q |
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| T |
4150452 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagaatagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
4150353 |
T |
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| Q |
224 |
gaaccaagggatattcttcga |
244 |
Q |
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| T |
4150352 |
gaaccaagggatatttttcga |
4150332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 124 - 244
Target Start/End: Complemental strand, 4166221 - 4166101
Alignment:
| Q |
124 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4166221 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagaatagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
4166122 |
T |
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| Q |
224 |
gaaccaagggatattcttcga |
244 |
Q |
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| T |
4166121 |
gaaccaagggatatttttcga |
4166101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 13490165 - 13490242
Alignment:
| Q |
153 |
aagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaagaaccaa |
230 |
Q |
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| T |
13490165 |
aagtacctgaagagtagttgaagacacagtcaatgattcaatattagcaagctcaactagccagttgagcagaaccaa |
13490242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 777419 - 777486
Alignment:
| Q |
153 |
aagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttga |
220 |
Q |
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| T |
777419 |
aagtacctcaagagtatttgaagacactgtcagtgattcgatattagcaagctcaactagccaattga |
777486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 4150575 - 4150524
Alignment:
| Q |
1 |
ctatacaatgagggagggtgaatcatgatcaatttaaagcaagtcatgtttt |
52 |
Q |
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|||| ||| |||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
4150575 |
ctatgcaacgagggagggtgaatcatgatcagtttaaggcaagtcatgtttt |
4150524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 4166344 - 4166293
Alignment:
| Q |
1 |
ctatacaatgagggagggtgaatcatgatcaatttaaagcaagtcatgtttt |
52 |
Q |
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|||| ||| |||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
4166344 |
ctatgcaacgagggagggtgaatcatgatcagtttaaggcaagtcatgtttt |
4166293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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