View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_high_33 (Length: 246)
Name: NF3270_high_33
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 1516086 - 1515862
Alignment:
| Q |
4 |
aaattattaaaagtaaccacttatatgagtgtcagtgtcaggtcggacacactttcataaagatgttgtgattatggtattacgtaccttaagcttcttg |
103 |
Q |
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| T |
1516086 |
aaattattaaaagtaaccacttatatgagtgtcagtgtcaggtcggacacactttcatatagatgttgtgattatggtattacgtaccttaagcttcttg |
1515987 |
T |
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| Q |
104 |
ggagcatatatgatgtacatgattaagtatgcaacttctataacacatccaatacaattgattgtgataatcaaaatggcattggtcttaaggaagccat |
203 |
Q |
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| T |
1515986 |
ggagcatatatgatgtacatgattaagtatgcaacttctataacacatccaatacaattgattgtgataatcaaaatggcattggtcttaaggaagccat |
1515887 |
T |
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| Q |
204 |
aatatagcaataacaatgcactaag |
228 |
Q |
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| T |
1515886 |
aatatagcaataacaatgcactaag |
1515862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 40445085 - 40445225
Alignment:
| Q |
88 |
taccttaagcttcttgggagcatatatgatgtacatgattaagtatgcaacttctataacacatccaatacaattgattgtgataatcaaaatggcattg |
187 |
Q |
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|||||| |||||||| ||||||||| | |||||||| |||| |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
40445085 |
taccttgagcttcttaggagcatatgttatgtacattattaggtatgcaacttccataacacatccaatagaattgattgtgataagaaaaatggcattg |
40445184 |
T |
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| Q |
188 |
gtcttaaggaagccataatatagcaataacaatgcactaag |
228 |
Q |
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| T |
40445185 |
gtctttaggaagccataatatacaaataacaacgtactaag |
40445225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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