View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3270_high_35 (Length: 243)

Name: NF3270_high_35
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3270_high_35
NF3270_high_35
[»] chr5 (7 HSPs)
chr5 (1-227)||(34232393-34232619)
chr5 (1-206)||(41713169-41713374)
chr5 (1-208)||(41571629-41571836)
chr5 (1-206)||(42129159-42129364)
chr5 (3-206)||(34240157-34240360)
chr5 (16-207)||(42118052-42118243)
chr5 (9-206)||(42123782-42123979)
[»] chr2 (2 HSPs)
chr2 (9-220)||(12248744-12248955)
chr2 (9-58)||(11994136-11994185)
[»] chr6 (2 HSPs)
chr6 (9-136)||(25522713-25522840)
chr6 (9-121)||(24141113-24141225)
[»] chr3 (1 HSPs)
chr3 (10-102)||(8523391-8523483)
[»] chr4 (1 HSPs)
chr4 (9-121)||(11118427-11118539)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 34232619 - 34232393
Alignment:
Q  1 tcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34232619 tcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgtagggatgataaattagcaagatattgtggaa 34232520  T
Q  101 tgataccggtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccagtaagttagaactaag 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34232519 tgataccggtcaatttgttgtgcgccaagttgagaaatcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccagtaagttagaactaag 34232420  T
Q  201 atcaagactaccaagctggtcaacatt 227  Q
    |||||||||||||||||| ||||||||    
T  34232419 atcaagactaccaagctgatcaacatt 34232393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 41713374 - 41713169
Alignment:
Q  1 tcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaa 100  Q
    ||||||| |||||| |||||||||||||||| |||||||||| | ||||||||||||||||| |||| |||| ||||||||||||||||| |||||||||    
T  41713374 tcactgtcctttgaaaagttacttggcaaagtgccataaaatttgttcatttgtagatccaaaacttcaaggtatgataaattagcaagacattgtggaa 41713275  T
Q  101 tgataccggtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccagtaagttagaactaag 200  Q
    || |||| |||||||||||||  ||||||||||||| ||  |||||  ||||| ||||||| |||| | |||| |||||    ||||||||| |||| ||    
T  41713274 tggtaccagtcaatttgttgtttgccaagttgagaaatcccagtgaactcatattgcaaattgacacaaagatttcaccacgtagtaagttataacttag 41713175  T
Q  201 atcaag 206  Q
    ||||||    
T  41713174 atcaag 41713169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 41571836 - 41571629
Alignment:
Q  1 tcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaa 100  Q
    |||| ||||||||| ||||||||||| |||| |||||||||| | |||||||||| |||||| ||||||||||||||||| || |||||| | |||||||    
T  41571836 tcacagtactttgaaaagttacttggtaaagtgccataaaatttgttcatttgtaaatccaaaacttgaagggatgataagtttgcaagacaatgtggaa 41571737  T
Q  101 tgataccggtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccagtaagttagaactaag 200  Q
    || | || |||||||||||||| ||||||||||| | | |||||||  |  || ||||||| ||| ||||||| |||||  | | ||||||| |||||||    
T  41571736 tggtgcctgtcaatttgttgtgtgccaagttgagcaattgaagtgaagttctattgcaaattgacgaagagatgtcaccggctaataagttaaaactaag 41571637  T
Q  201 atcaagac 208  Q
    ||||||||    
T  41571636 atcaagac 41571629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 42129159 - 42129364
Alignment:
Q  1 tcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaa 100  Q
    |||| ||||| ||| ||||||||||||||||  |||||||||||||||||||| | |||||| ||||||||| | ||| ||||||||||| |||||||||    
T  42129159 tcacagtactctgaaaagttacttggcaaagttccataaaatctattcatttgcaaatccaaaacttgaaggaacgatgaattagcaagacattgtggaa 42129258  T
Q  101 tgataccggtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccagtaagttagaactaag 200  Q
    ||||| | ||||| |  ||||| ||||||||||| | | |||||||  ||| | ||||||| |||  |||||  |||||  ||||||||||| |||||||    
T  42129259 tgatatctgtcaaatgattgtgtgccaagttgagtaattgaagtgaactcaaattgcaaattgactcagagaggtcaccagccagtaagttaaaactaag 42129358  T
Q  201 atcaag 206  Q
    ||||||    
T  42129359 atcaag 42129364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 34240360 - 34240157
Alignment:
Q  3 actgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatg 102  Q
    |||| ||||||| |||||| | ||||||| |||||||||  | ||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||    
T  34240360 actggactttgaaaagttattaggcaaagtgccataaaagttgttcatttgtagatccaaaatttgaagggatggtaaattagcaagacattgtggaatg 34240261  T
Q  103 ataccggtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccagtaagttagaactaagat 202  Q
     |||| || || ||||||||  |||||||||||| |  ||| ||  ||| | ||||||| |||| |||||  | |||  | ||||||||| |||||||||    
T  34240260 ttacctgtgaaattgttgtgtcccaagttgagaaattcaagggaactcaaattgcaaattgacacagagaggttaccaacaagtaagttaaaactaagat 34240161  T
Q  203 caag 206  Q
    ||||    
T  34240160 caag 34240157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 42118052 - 42118243
Alignment:
Q  16 aagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatgataccggtcaatt 115  Q
    ||||||||||||||||  |||||||||||||||||||| | |||||| |||||||||  |||| ||||||||||| |||||||||||||  | |||||||    
T  42118052 aagttacttggcaaagttccataaaatctattcatttgcaaatccaaaacttgaaggattgatgaattagcaagacattgtggaatgatgtctgtcaatt 42118151  T
Q  116 tgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccagtaagttagaactaagatcaaga 207  Q
      ||||| ||||||||||| | |  ||||||  ||| | ||||||| |||  |||||  |||||  ||| ||||||| ||||||||||||||    
T  42118152 gattgtgtgccaagttgagtagtttaagtgaactcaaattgcaaattgactcagagaggtcaccaaccactaagttaaaactaagatcaaga 42118243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 42123782 - 42123979
Alignment:
Q  9 ctttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatgataccg 108  Q
    |||||| ||||||||||||||||  ||||||||  | ||||||||||||| ||| ||||||||||||| | | | ||||| | ||||||||||||||||     
T  42123782 ctttgaaaagttacttggcaaagtaccataaaacatgttcatttgtagattcaaaacttgaagggatggtgattcagcaaaacattgtggaatgatacca 42123881  T
Q  109 gtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccagtaagttagaactaagatcaag 206  Q
    ||||| | |||||   |||||||||||| | |||||||  ||||| ||||||  | ||||| ||| ||||| | |||||| |||  ||||||||||||    
T  42123882 gtcaaatcgttgtaacccaagttgagaaattgaagtgaactcatattgcaaactgccaaagggatttcaccattcagtaaattatgactaagatcaag 42123979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 12248744 - 12248955
Alignment:
Q  9 ctttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatgataccg 108  Q
    ||||||||||||||||||||||| ||||| |||| | ||||||||||||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||     
T  12248744 ctttgagaagttacttggcaaagtgccatgaaatttgttcatttgtagattcaaaacttgaagggatgataaatcagcaagacattgtggaatgatacct 12248843  T
Q  109 gtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccagtaagttagaactaagatcaagac 208  Q
    |||||||  |||||  ||| ||||||  || |||||||  ||||  ||||||| || | |||||  |||||  | ||||||||| ||||||||||||| |    
T  12248844 gtcaattgattgtgttccaggttgagtgtttgaagtgaactcatgttgcaaattgatacagagaggtcaccagctagtaagttaaaactaagatcaaggc 12248943  T
Q  209 taccaagctggt 220  Q
     ||| |||||||    
T  12248944 caccgagctggt 12248955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 11994185 - 11994136
Alignment:
Q  9 ctttgagaagttacttggcaaagcgccataaaatctattcatttgtagat 58  Q
    ||||||||||||||||||||||| ||||| | || | |||||||||||||    
T  11994185 ctttgagaagttacttggcaaagtgccatgacatgtgttcatttgtagat 11994136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 25522840 - 25522713
Alignment:
Q  9 ctttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatgataccg 108  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||| | | | ||||||| ||||||||||||||||     
T  25522840 ctttgaaaagttacttggcaaagtgccatgaaatctattcatttgtagattcaaaacttgaagggatgttgattcagcaagacattgtggaatgatacca 25522741  T
Q  109 gtcaatttgttgtgcgccaagttgagaa 136  Q
    ||||| |||||||   ||||||||||||    
T  25522740 gtcaaattgttgtatcccaagttgagaa 25522713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 24141113 - 24141225
Alignment:
Q  9 ctttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatgataccg 108  Q
    |||||| |||||||||||||||| ||||| |||| | || |||||||||| ||| ||| ||||||||| | ||| || |||| |||||||||||||||||    
T  24141113 ctttgaaaagttacttggcaaagtgccatgaaatgtgttgatttgtagattcaaaactcgaagggatggtgaatcagaaagacattgtggaatgataccg 24141212  T
Q  109 gtcaatttgttgt 121  Q
    ||||| |||||||    
T  24141213 gtcaaattgttgt 24141225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 8523391 - 8523483
Alignment:
Q  10 tttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatg 102  Q
    ||||| ||||||||||||||||  |||| |||| | ||||||||||||||||| |||| |||| ||||||||||||||||| |||||||||||    
T  8523391 tttgaaaagttacttggcaaagttccatgaaatttgttcatttgtagatccaaaacttcaaggtatgataaattagcaagacattgtggaatg 8523483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 11118427 - 11118539
Alignment:
Q  9 ctttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatgataccg 108  Q
    |||||| |||||||| ||||||| ||||| |||| | ||||||||||||| ||| || | |||| ||| | | | ||||||| |||||||||||| |||     
T  11118427 ctttgaaaagttactaggcaaagtgccatgaaatttgttcatttgtagattcaaaacataaaggaatggtgattcagcaagacattgtggaatgacacca 11118526  T
Q  109 gtcaatttgttgt 121  Q
    ||||| |||||||    
T  11118527 gtcaaattgttgt 11118539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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