View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_high_37 (Length: 237)
Name: NF3270_high_37
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 4151231 - 4151444
Alignment:
| Q |
9 |
ggtcttatttgcaacatatattgcatctaaatttgggttttgcagacatggtcagatgaaggatactatctagagaattatgaggtgcattagtttttcc |
108 |
Q |
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| T |
4151231 |
ggtctgatttgcaacatatattgcatctaaatttgggttttgcagacatggtcaggtgaaggatactatctagagaattatgaggtgcattagtttttcc |
4151330 |
T |
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| Q |
109 |
aagagatcggagtaagtgtcaacaattttgcaaagagaaatctttccctagctatagatagaatgtttaagatttatttgttttcctgcaacttaccgaa |
208 |
Q |
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| T |
4151331 |
aagagatcggagtaagtgtcaacaattttgccaagagaaatctttccctagctatagatagaatgtttaagatttatttgttttcctgcaacttaccgaa |
4151430 |
T |
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| Q |
209 |
ttatcgtttctatt |
222 |
Q |
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| T |
4151431 |
atatcgtttctatt |
4151444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 4167000 - 4167213
Alignment:
| Q |
9 |
ggtcttatttgcaacatatattgcatctaaatttgggttttgcagacatggtcagatgaaggatactatctagagaattatgaggtgcattagtttttcc |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4167000 |
ggtctgatttgcaacatatattgcatctaaatttgggttttgcagacatggtcaggtgaaggatactatctagagaattatgaggtgcattagtttttcc |
4167099 |
T |
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| Q |
109 |
aagagatcggagtaagtgtcaacaattttgcaaagagaaatctttccctagctatagatagaatgtttaagatttatttgttttcctgcaacttaccgaa |
208 |
Q |
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| T |
4167100 |
aagagatcggagtaagtgtcaacaattttgccaagagaaatctttccctagctatagatagaatgtttaagatttatttgttttcctgcaacttaccgaa |
4167199 |
T |
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| Q |
209 |
ttatcgtttctatt |
222 |
Q |
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| T |
4167200 |
atatcgtttctatt |
4167213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 7021167 - 7021227
Alignment:
| Q |
163 |
tagatagaatgtttaaga-tttatttgttttcctgcaacttaccgaattatcgtttctatt |
222 |
Q |
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| T |
7021167 |
tagatagcatgtttaagaatttatttattttcctgcaacttattgaattatcgtttctatt |
7021227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 7021004 - 7021054
Alignment:
| Q |
4 |
attttggtcttatttgcaacatatattgcatctaaatttgggttttgcaga |
54 |
Q |
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| T |
7021004 |
atttttgtctgatttgcaacatatattgcctctaaatttaggttttacaga |
7021054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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