View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_high_4 (Length: 697)
Name: NF3270_high_4
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 50631903 - 50632230
Alignment:
| Q |
1 |
agcatcaactatggagtaactagcaaatccatatctaccttggcttatagcatcagctgcttgtggaagaatgtatttcacaacaggtatgtatgactca |
100 |
Q |
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| T |
50631903 |
agcatcaactatggagtaactagcaaatccatatctaccttggcttatagcatcagctgcttgtggaagaatgtatttcacaacaggtatgtatgactca |
50632002 |
T |
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| Q |
101 |
gcacaaaaagccaattgttgctccaagtctttgtctgttgtttgtttgataagctcttcaatgtaacttagtgtgtcagtagcatttgctaaaatgtcat |
200 |
Q |
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| T |
50632003 |
gcacaaaaagccaattgttgctccaagtctttgtctgttgtttgtttgataagctcttcaatgtaacttagtgtgtcagtagcatttgctaaaatgtcat |
50632102 |
T |
|
| Q |
201 |
tgaccattatgagggccatacctttaggatcagattttggagctagaggattggcatgtaagatggagctacataggtcataaaagggtgtctgtttgca |
300 |
Q |
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| T |
50632103 |
tgaccattatgagggccatacctttaggatcagattttggagctagaggattggcatgtaagatggagctacataggtcataaaagggtgtctgtttgca |
50632202 |
T |
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| Q |
301 |
tatttggtccaccaaatcatccttcatt |
328 |
Q |
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| T |
50632203 |
tatttggtccaccaaatcatccttcatt |
50632230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 388 - 516
Target Start/End: Original strand, 50632290 - 50632421
Alignment:
| Q |
388 |
cacacaagttgatgttttcttcattttctctttcaactagaattcaagagt---gtgtttgtttttgttgaatgaatgaatgaccaatgttttcacttgg |
484 |
Q |
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| T |
50632290 |
cacacaagttgatgttttcttcattttctctttcaactacaattcaagagtagtgtgtttgtttttgtggaatgaatgaatgaccaatgttttcacttgg |
50632389 |
T |
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| Q |
485 |
ctgctatttaaggtagtttggtcggtgagcta |
516 |
Q |
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| T |
50632390 |
ctgctatttaaggtagtttggtcggtgagcta |
50632421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 591 - 686
Target Start/End: Original strand, 50632529 - 50632624
Alignment:
| Q |
591 |
attattgttgtcacatgtaagttgtttgttgctttttgtaaccatgggctttgagtcgacatagtgattttaaggttaaaccccctttcatctcac |
686 |
Q |
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| T |
50632529 |
attattgttgtcacatgtaagttgtttgttgctttttgtaaccatgggctttgagtcgacatagtgattttaaggttaaaccccctttcatgtcac |
50632624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 12800420 - 12800350
Alignment:
| Q |
45 |
ttatagcatcagctgcttgtggaagaatgtatttcacaacaggtatgtatgactcagcacaaaaagccaat |
115 |
Q |
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| T |
12800420 |
ttatagcatcagcagcttgtggaagagtgtacttcacaactggtatatatgattcagcacaaaatgccaat |
12800350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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