View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3270_high_6 (Length: 504)

Name: NF3270_high_6
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3270_high_6
NF3270_high_6
[»] chr5 (18 HSPs)
chr5 (10-488)||(31464688-31465166)
chr5 (11-488)||(31483566-31484040)
chr5 (99-488)||(31387528-31387914)
chr5 (142-373)||(31390675-31390900)
chr5 (313-488)||(31460092-31460267)
chr5 (100-201)||(31460376-31460478)
chr5 (129-225)||(31407401-31407497)
chr5 (129-201)||(31416558-31416630)
chr5 (131-201)||(31494135-31494205)
chr5 (399-488)||(31384148-31384237)
chr5 (129-198)||(31475956-31476025)
chr5 (129-198)||(40843338-40843407)
chr5 (112-188)||(31384407-31384483)
chr5 (364-471)||(31317597-31317704)
chr5 (128-187)||(31395765-31395824)
chr5 (115-198)||(31643895-31643978)
chr5 (140-198)||(31463034-31463092)
chr5 (332-373)||(31462866-31462907)


Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 10 - 488
Target Start/End: Complemental strand, 31465166 - 31464688
Alignment:
Q  10 aagaatatgaaagcaaatattactcgcttgagaaacaacatgacgtcgaaggtcaacaaaatgttgaataggaagatgcaggtaaagaaatggagatatc 109  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31465166 aagaaaatgaaagcaaacattactcgcttgagaaacaacatgacgtcgaaggtcaacaaaatgttgaataggaagatgcaggtaaagaaatggagatatc 31465067  T
Q  110 tgtgttttgtttcatccattgttggactgctatgttacgctctaagcccttccttcaatcatctatttggaaagtggaatttattgaaggtatctctgta 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31465066 tgtgttttgtttcatccattgttggactgctatgttacgctctaagcccttccttcaatcatctatttggaaagtggaatttattgaaggtatctctgta 31464967  T
Q  210 ctgtctgttcagtttcgttatctgccttgcggacttgttagcaaatgcaatcacatggcaaaaatcgccaagtctcaggttcagagctcatttggcagtt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31464966 ctgtctgttcagtttcgttatctgccttgcggacttgttagcaaatgcaatcacatggcaaaaatcgccaagtctcaggttcagagctcatttggcagtt 31464867  T
Q  310 tcagttttcacaatcactactatttactcatttttctttgataaagctaacgcaaaaccagatgcatatagccttatatcgtctgctgcttttgctgtca 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31464866 tcagttttcacaatcactactatttactcatttttctttgataaagctaatgcaaaaccagatgcatatagccttatatcgtctgctgcttttgctgtca 31464767  T
Q  410 tgtcgctttgtatgtcaaagcaaactcacttgggatttgaggttgatctcctttattttttctgtggatatttcacttt 488  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31464766 tgtcgctatgtatgtcaaagcaaactcacttgggatttgaggttgatctcctttattttttctgtggatatttcacttt 31464688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 488
Target Start/End: Original strand, 31483566 - 31484040
Alignment:
Q  11 agaatatgaaagcaaatattactcgcttgagaaacaacatgacgtcgaaggtcaacaaaatgttgaataggaagatgcaggtaaagaaatggagatatct 110  Q
    |||| ||||||||||| ||| ||||||||||||||||| |||| || ||| ||||| ||||||||| ||||||||||||| ||| || |||||||| | |    
T  31483566 agaaaatgaaagcaaacattgctcgcttgagaaacaacgtgacttccaagctcaaccaaatgttgagtaggaagatgcagctaatgatatggagatttgt 31483665  T
Q  111 gtgttttgtttcatccattgttggactgctatgttacgctctaagcccttccttcaatcatctatttggaaagtggaatttattgaaggtatctctgtac 210  Q
    ||||||||||||||||||| ||||||| || | ||||||||||||| |||||||||||||| ||| ||||||||||| ||| |||||| ||  ||| |||    
T  31483666 gtgttttgtttcatccattattggactactcttttacgctctaagctcttccttcaatcatatatgtggaaagtggagtttgttgaagataattctttac 31483765  T
Q  211 tgtctgttcagtttcgttatctgccttgcggacttgttagcaaatgcaatcacatggcaaaaatcgccaagtctcaggttcagagctcatttggcagttt 310  Q
      | | ||||||||| |||||||| | ||||| ||| | |||||      || ||||||||  ||||||||||| ||||||||||||||||||||| |||    
T  31483766 actgttttcagtttcattatctgcatcgcggatttgattgcaaa------catatggcaaacgtcgccaagtcttaggttcagagctcatttggcatttt 31483859  T
Q  311 cagttttcacaatcactactatttactcatttttctttgataaa---gctaacgcaaaaccagatgcatatagccttatatcgtctgctgcttttgctgt 407  Q
     ||||||||||||||| ||||||||||| | | |||||||||||   | |||||||||||| |||||||||||||| ||||||  |||||||||||||||    
T  31483860 tagttttcacaatcacaactatttactcctatatctttgataaaaaagataacgcaaaaccggatgcatatagcctgatatcgcttgctgcttttgctgt 31483959  T
Q  408 catgtcgctttgtatgtcaaagcaaactcacttgggatttgaggttgatctcctttattttttctgtggatatttcacttt 488  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  31483960 catgtcgctttgtatgtcaaagcaaactcacctgggatttgaggttgatctcctatattttttttgtgcatatttcacttt 31484040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 99 - 488
Target Start/End: Complemental strand, 31387914 - 31387528
Alignment:
Q  99 atggagatatctgtgttttgtttcatccattgttggactgctatgttacgctctaagcccttccttcaatcatctatttggaaagtggaatttattgaag 198  Q
    |||||||| | ||| ||||||||||||  ||||||||||||| ||||| ||||| ||| ||||||||| |||||||||||| || ||||| || || |||    
T  31387914 atggagatttgtgtcttttgtttcatctgttgttggactgctttgttatgctcttagctcttccttcactcatctatttgggaactggaacttttttaag 31387815  T
Q  199 gtatctctgtactgtctgttcagtttcgttatctgccttgcggacttgttagcaaatgcaatcacatggcaaaaatcg---ccaagtctcaggttcagag 295  Q
    |||| ||| ||  |  | ||||||||||||||||||||  |   ||||||      ||||| || ||||||||| |||    | |||||     | | ||    
T  31387814 gtatttctttatagcattttcagtttcgttatctgcctcaccatcttgtt------tgcaaacaaatggcaaaactcgaacactagtcttccacttaaag 31387721  T
Q  296 ctcatttggcagtttcagttttcacaatcactactatttactcatttttctttgataaagctaacgcaaaaccagatgcatatagccttatatcgtctgc 395  Q
    |||||||||   |||| ||||||| |||||| ||| ||||||| || || |||||||||||||||| ||||||||||   || || || || || | |||    
T  31387720 ctcatttggtgttttcggttttcataatcaccactgtttactccttcttttttgataaagctaacggaaaaccagatttgtacagtctgatttcctgtgc 31387621  T
Q  396 tgcttttgctgtcatgtcgctttgtatgtcaaagcaaactcacttgggatttgaggttgatctcctttattttttctgtggatatttcacttt 488  Q
    |||||||||  ||||||| ||  || ||||||||||||||||||| ||||| || ||||||||||| |||||||| || |||||||| |||||    
T  31387620 tgcttttgccatcatgtctctcagtttgtcaaagcaaactcacttcggattcgaagttgatctcctatattttttttgcggatatttaacttt 31387528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 373
Target Start/End: Complemental strand, 31390900 - 31390675
Alignment:
Q  142 tgttacgctctaagcccttccttcaatcatctatttggaaagtggaatttattgaaggtatctctgtactgtctgttcagtttcgttatctgccttgcgg 241  Q
    ||||| ||||||||  |||||||||| |||||||||||||| ||||| || || ||| | | |||||||  | | ||||||||| |||| ||||||||      
T  31390900 tgttatgctctaagttcttccttcaaccatctatttggaaactggaacttgttaaagatttttctgtacactgttttcagtttcattatttgccttgcca 31390801  T
Q  242 acttgttagcaaatgcaatcacatggcaaaaatcgccaagtctcaggttcagagctcatttggcagtttcagttttcacaatcactactatttactcatt 341  Q
     ||| || |||||      || ||||||||| || |||||||||||| | ||||||||||||| | | ||  |||||||||| || ||  ||||||| ||    
T  31390800 tcttttttgcaaa------caaatggcaaaactcaccaagtctcaggcttagagctcatttggtattctctattttcacaataacaacagtttactcctt 31390707  T
Q  342 tttctttgataaagctaacgcaaaaccagatg 373  Q
    |||||||||||||||||||| |||||||||||    
T  31390706 tttctttgataaagctaacggaaaaccagatg 31390675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 313 - 488
Target Start/End: Complemental strand, 31460267 - 31460092
Alignment:
Q  313 gttttcacaatcactactatttactcatttttctttgataaagctaacgcaaaaccagatgcatatagccttatatcgtctgctgcttttgctgtcatgt 412  Q
    ||||||| |||||| ||| ||||||| || || |||||||||||||||| ||||||||||   || || || || ||   |||||||||||| |||||||    
T  31460267 gttttcataatcaccactgtttactccttcttttttgataaagctaacggaaaaccagatttgtacagtctaatttccggtgctgcttttgccgtcatgt 31460168  T
Q  413 cgctttgtatgtcaaagcaaactcacttgggatttgaggttgatctcctttattttttctgtggatatttcacttt 488  Q
    | ||  || ||||||||||||||||||| ||||| || ||||||||||| || ||||| || |||||||| |||||    
T  31460167 ctctcagtttgtcaaagcaaactcacttcggattcgaagttgatctcctatactttttttgcggatatttaacttt 31460092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 31460478 - 31460376
Alignment:
Q  100 tggagatatctgtgttttgtttcatccattgttgg-actgctatgttacgctctaagcccttccttcaatcatctatttggaaagtggaatttattgaag 198  Q
    ||||||| | ||||||||||||||||| ||||||| |||||| ||||| ||||| ||| |||||||||||||||||||||| || ||||| || || |||    
T  31460478 tggagatgtgtgtgttttgtttcatccgttgttggcactgctttgttatgctcttagctcttccttcaatcatctatttgggaactggaacttttttaag 31460379  T
Q  199 gta 201  Q
    |||    
T  31460378 gta 31460376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 31407497 - 31407401
Alignment:
Q  129 tgttggactgctatgttacgctctaagcccttccttcaatcatctatttggaaagtggaatttattgaaggtatctctgtactgtctgttcagtttc 225  Q
    ||||||| |||| ||||| ||||| ||| |||||||||| |||||||||||||| |||||||| |||||| ||| ||| |||  ||| |||||||||    
T  31407497 tgttggattgctctgttatgctctcagcacttccttcaaccatctatttggaaattggaatttgttgaagatatttctttacactcttttcagtttc 31407401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 31416630 - 31416558
Alignment:
Q  129 tgttggactgctatgttacgctctaagcccttccttcaatcatctatttggaaagtggaatttattgaaggta 201  Q
    |||||||||| | ||||| ||||||||| |||| ||||| |||||||||||||| |||||||| |||||||||    
T  31416630 tgttggactgatttgttatgctctaagctcttctttcaaccatctatttggaaattggaatttgttgaaggta 31416558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 31494205 - 31494135
Alignment:
Q  131 ttggactgctatgttacgctctaagcccttccttcaatcatctatttggaaagtggaatttattgaaggta 201  Q
    ||||| |||| ||||| ||||||||| |||| ||||| |||||||||||||| |||||||| |||||||||    
T  31494205 ttggattgctttgttatgctctaagctcttcgttcaaccatctatttggaaattggaatttgttgaaggta 31494135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 488
Target Start/End: Complemental strand, 31384237 - 31384148
Alignment:
Q  399 ttttgctgtcatgtcgctttgtatgtcaaagcaaactcacttgggatttgaggttgatctcctttattttttctgtggatatttcacttt 488  Q
    ||||||| ||||||  ||| || ||||||| ||||||||||| | |||||||||||||||| | ||||||||||| |||| ||| |||||    
T  31384237 ttttgctatcatgtatcttggtttgtcaaaacaaactcacttcgaatttgaggttgatctcttatattttttctgcggatgtttaacttt 31384148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 31476025 - 31475956
Alignment:
Q  129 tgttggactgctatgttacgctctaagcccttccttcaatcatctatttggaaagtggaatttattgaag 198  Q
    |||||||||||| ||||| ||||||||| ||||||| ||  ||||||||||||| |||||||| ||||||    
T  31476025 tgttggactgctttgttatgctctaagctcttcctttaactatctatttggaaactggaatttgttgaag 31475956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 40843407 - 40843338
Alignment:
Q  129 tgttggactgctatgttacgctctaagcccttccttcaatcatctatttggaaagtggaatttattgaag 198  Q
    |||||||||| | ||||| ||||||||| ||||||||||  ||||||||||||| |||||||| ||||||    
T  40843407 tgttggactggtttgttatgctctaagctcttccttcaactatctatttggaaattggaatttgttgaag 40843338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 31384483 - 31384407
Alignment:
Q  112 tgttttgtttcatccattgttggactgctatgttacgctctaagcccttccttcaatcatctatttggaaagtggaa 188  Q
    |||||||||||||| |||||||| ||| | | ||| ||||| ||| |||||||||||||||||||||| || |||||    
T  31384483 tgttttgtttcatcaattgttggtctgttttattatgctcttagctcttccttcaatcatctatttgggaaatggaa 31384407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 471
Target Start/End: Original strand, 31317597 - 31317704
Alignment:
Q  364 aaaccagatgcatatagccttatatcgtctgctgcttttgctgtcatgtcgctttgtatgtcaaagcaaactcacttgggatttgaggttgatctccttt 463  Q
    |||||||||||||||||  | || || | |||||| |||||| | ||||| ||| || |||||| ||||||||| | |||||||||  ||||||| ||||    
T  31317597 aaaccagatgcatatagtttaatttcatgtgctgcctttgctattatgtcacttagtttgtcaaggcaaactcagtggggatttgaaattgatcttcttt 31317696  T
Q  464 attttttc 471  Q
    ||||||||    
T  31317697 attttttc 31317704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 31395765 - 31395824
Alignment:
Q  128 ttgttggactgctatgttacgctctaagcccttccttcaatcatctatttggaaagtgga 187  Q
    ||||||||||  | ||||| ||||| ||| ||||||||||||||||||||||||| ||||    
T  31395765 ttgttggacttgtttgttatgctctcagctcttccttcaatcatctatttggaaactgga 31395824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 31643978 - 31643895
Alignment:
Q  115 tttgtttcatccattgttggactgctatgttacgctctaagcccttccttcaatcatctatttggaaagtggaatttattgaag 198  Q
    |||| |||||| ||||||||||| || ||||| ||||| ||| ||||||||||  ||||||||||| | |||||| | ||||||    
T  31643978 tttgcttcatctattgttggactactttgttatgctcttagctcttccttcaactatctatttggagattggaatctgttgaag 31643895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 31463092 - 31463034
Alignment:
Q  140 tatgttacgctctaagcccttccttcaatcatctatttggaaagtggaatttattgaag 198  Q
    ||||||| ||| ||||| |||||||||| |||||||||||||| ||||| || ||||||    
T  31463092 tatgttatgctgtaagctcttccttcaaccatctatttggaaattggaacttgttgaag 31463034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 373
Target Start/End: Complemental strand, 31462907 - 31462866
Alignment:
Q  332 tttactcatttttctttgataaagctaacgcaaaaccagatg 373  Q
    ||||||| |||||||||||||||| ||||| |||||||||||    
T  31462907 tttactcgtttttctttgataaagataacggaaaaccagatg 31462866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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