View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3270_low_1 (Length: 1579)
Name: NF3270_low_1
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 1291; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1291; E-Value: 0
Query Start/End: Original strand, 22 - 1571
Target Start/End: Complemental strand, 29334402 - 29332863
Alignment:
| Q |
22 |
acacgagcttacaaagacaaaccatttacaannnnnnnccaccataagacgaatcgttcggtagaatacaaannnnnnncctaaggaaaaaactccaaat |
121 |
Q |
| |
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||||||||||||||| |||||||||||||| || || | ||||||||||| ||||||||||||| ||| | || |||||||||||| |
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| T |
29334402 |
acacgagcttacaaaagcaaaccatttacaattttttttcaacaaatgacgaatcgtttggtagaatacaaatttttttcctcaagacaaaactccaaat |
29334303 |
T |
|
| Q |
122 |
taccatagtcccttcccttaagaatcgaaggattaacacaacnnnnnnnttcacatcttagaagcaatgtgatatcaaattggattttctattaatacaa |
221 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
29334302 |
taccatagtccctttccttaagaatcgaaggattaacacaacaaaaaaattcacatcttagaagcaatgtgatatcaaattgaattttctattaatacaa |
29334203 |
T |
|
| Q |
222 |
cataacgctggtacaaatctgagtcgtcgactttaaagttggcggcttatatcattttagtgtgtgaaaccgaatttaaaatcttaaccaactaatctta |
321 |
Q |
| |
|
|| || ||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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|
| T |
29334202 |
cagaatgctggtacaaatccgaatcgtcaactttaaagttggcggctcatatcattttagtgtgtgaatccgaatttaaaatcttaaccaactaatttta |
29334103 |
T |
|
| Q |
322 |
aatcaacaattgagatctactgtatcctaaaactatatgaaattccaacaactcaggtccatgtgataagaagagctcaagtaactagtcgcaaataaca |
421 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
29334102 |
aatcaacaattgagatctactatatcgtaaaactatatgaaattccaacaactcatgtccatgtgataagaagagctcaagtaaccacccgcaaataaca |
29334003 |
T |
|
| Q |
422 |
actttgaccagacagaactgagtaacgggtttttactgccactacattaacccccattaaccctatataataagagaaaaacccttcttcacaaattaca |
521 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
29334002 |
actttgactagacagaactga---acgggtttttactgccactacattaaccc----------tatataataagagaaaaacccttcttcacaaattaca |
29333916 |
T |
|
| Q |
522 |
atactgccactgtctttcttctaaaattcaacagaaaagctgacgtggaacgccgccacaacagaatgaaactgaaattcacttttccctccaaaaaccg |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333915 |
atactgccactgtctttcttctaaaattcaacagaaaagctgacgtggaacgccgccataacagaatgaaactgaaattcacttttccctccaaaaaccg |
29333816 |
T |
|
| Q |
622 |
ccaccgaacctccacttccgcctccgtcacatctccgccaccgccgcc---acctccaccactagaatcttcacttcgcaaccctttcgaaccggatata |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
29333815 |
ccaccgaacctccacttccgcctccgtcacctctccaccaccgccgccgccacctccaccgctagaatcttcccttcgcaaccctttcgaaccggatata |
29333716 |
T |
|
| Q |
719 |
aacccgccaccgcgcaactacttggaagaaatagtcaacaaacgaagacgcatcgaagaaaaccaagacgaatcactcctccatggcttcgaacttcaac |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333715 |
aacccgccaccgcgcaactacttggaagaaatagtcaacaaacgaagacgcatcgaagaaaaccaagacgaatcactcctccatggcttcgaacttcaac |
29333616 |
T |
|
| Q |
819 |
aacacgtcgaaacgattcttcaatccaacgatctttcattgcttcaagaagtaatcgacgagtacgcgaattccaaggacgaatcattattcacaatttt |
918 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333615 |
aacacgtcgcaacgattcttcaatccaacgatctttcatcgcttcaagaagtaatcgacgagtacgcgaattccaaggacgaatcattattcacaatttt |
29333516 |
T |
|
| Q |
919 |
caaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaatttcaacctccgattcaaacgagaatcgaaaccgttaat |
1018 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333515 |
caaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaatttcaacctccgattcaaacgagaatcgaaaccgttaat |
29333416 |
T |
|
| Q |
1019 |
catcttcttcaagttcttcccgaaggaattaacggtcctttcaattctattatcttactcgaactgaagaatcctcttcttcattcgcttaaggcggaat |
1118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333415 |
catcttcttcaagttcttcccgaaggaattaacggtcctttcaattctattatcttactcgaactgaagaatcctcttcttcattcgcttaaggcggaat |
29333316 |
T |
|
| Q |
1119 |
ctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgctgataggttttaccggtgttctcttggtggttgggtggagcttcttgagta |
1218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333315 |
ctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgctgataggttttaccggtgttctcttggtggttgggtggagcttcttgagta |
29333216 |
T |
|
| Q |
1219 |
tgttctcgcttgtttttccagtgaagtgcaatcggaaaataagaaagggcttttgttgttaacggtaataccggtggatgttgcgaatgagagagcattt |
1318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333215 |
tgttctcgcttgtttttccagtgaagtgcaatcggaaaataagaaagggcttttgttgttaacggtaataccggtggatgttgcgaatgagagagcattt |
29333116 |
T |
|
| Q |
1319 |
tggttgaatcaagggaattttgatcttgtgtttgggagtatcttggaatggacttatcgggataaggaattgaagggattggcatacaatgcatcaattt |
1418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333115 |
tggttgaatcaagggaattttgatcttgtgtttgggagtatcttggaatggacttatcgggataaggaattgaagggattggcatacaatgcatcaattt |
29333016 |
T |
|
| Q |
1419 |
cgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgttgccgaatttgttgagtattatcgatgaacatggggaagaagaggt |
1518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333015 |
cgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgttgccgaatttgttgagtattatcgatgaacatggggaagaagaggt |
29332916 |
T |
|
| Q |
1519 |
tttggtggatagggttaagcgtttgggcgatttagttacgttggatgatgatg |
1571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29332915 |
tttggtggatagggttaagcgtttgggcgatttagttacgttggatgatgatg |
29332863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 5e-29
Query Start/End: Original strand, 1378 - 1516
Target Start/End: Complemental strand, 29321862 - 29321724
Alignment:
| Q |
1378 |
ggataaggaattgaagggattggcatacaatgcatcaatttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgttgccg |
1477 |
Q |
| |
|
|||| |||||||||| | |||||||| || ||||||| |||||||||||||||||||| |||| ||| |||||||||| |||| |||| |||| |||||| |
|
|
| T |
29321862 |
ggatcaggaattgaaagcattggcattcactgcatcactttcgttgatgttattgtcgaaggatcttcagagaacagacgtatacgatattctcttgccg |
29321763 |
T |
|
| Q |
1478 |
aatttgttgagtattatcgatgaacatggggaagaagag |
1516 |
Q |
| |
|
| |||||||| ||||||| || ||||||| ||||||||| |
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| T |
29321762 |
attttgttgaatattatcaatcaacatggagaagaagag |
29321724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 769 - 952
Target Start/End: Complemental strand, 29305285 - 29305102
Alignment:
| Q |
769 |
catcgaagaaaaccaagacgaatcactcctccatggcttcgaacttcaacaacacgtcgaaacgattcttcaatccaacgatctttcattgcttcaagaa |
868 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||| ||||| | |||| | ||||||||| || || | | | |||||| |
|
|
| T |
29305285 |
catcgaagaaaaccaagacagatcactcatccacggcttcgaacttcgacaacacgccgaaaggtttctcctatccaacgacctctcgtcgttgcaagaa |
29305186 |
T |
|
| Q |
869 |
gtaatcgacgagtacgcgaattccaaggacgaatcattattcacaattttcaaatcattcgcacatcattaccctaacgcattc |
952 |
Q |
| |
|
| |||||| || ||| | | ||| | | |||| |||||||| ||||||||||| ||| ||| |||||| |||||||||||| |
|
|
| T |
29305185 |
gcaatcgatgaatactctcaaaccaggaatcaatctttattcacgattttcaaatctttcacacttcattatcctaacgcattc |
29305102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 710 - 824
Target Start/End: Complemental strand, 29322533 - 29322419
Alignment:
| Q |
710 |
ccggatataaacccgccaccgcgcaactacttggaagaaatagtcaacaaacgaagacgcatcgaagaaaaccaagacgaatcactcctccatggcttcg |
809 |
Q |
| |
|
|||||||||||||| |||| |||||| |||||||||||||| | ||||| |||| ||||||||| | |||||||| |||||||| |||| ||| || |
|
|
| T |
29322533 |
ccggatataaacccaccactgcgcaatcacttggaagaaataatgaacaagagaaggcgcatcgaacacaaccaagataaatcactcatccacggcctcc |
29322434 |
T |
|
| Q |
810 |
aacttcaacaacacg |
824 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
29322433 |
aacttcaagaacacg |
29322419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1378 - 1568
Target Start/End: Complemental strand, 29304676 - 29304486
Alignment:
| Q |
1378 |
ggataaggaattgaagggattggcatacaatgcatcaatttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgttgccg |
1477 |
Q |
| |
|
|||| |||||||||||| | |||||||| || |||||||||| ||||| |||||||| | || || || || || |||| | ||| ||| |||| | |
|
|
| T |
29304676 |
ggatcaggaattgaaggcactggcatacgattcatcaatttcattgatattattgtcaaatgattttctgaaaaatgaagtatccaattctctcttgcgg |
29304577 |
T |
|
| Q |
1478 |
aatttgttgagtattatcgatgaacatggggaagaagaggttttggtggatagggttaagcgtttgggcgatttagttacgttggatgatg |
1568 |
Q |
| |
|
||||| |||| ||| |||||| |||| || |||||||||||| ||||| ||||| |||| |||||| | || ||||||| |||||||||| |
|
|
| T |
29304576 |
aatttattgaatatcatcgatcaacacggagaagaagaggttctggtgaataggattaatcgtttgtgggaattagttaaattggatgatg |
29304486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1101 - 1184
Target Start/End: Complemental strand, 29322142 - 29322059
Alignment:
| Q |
1101 |
attcgcttaaggcggaatctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgctgataggttttaccggt |
1184 |
Q |
| |
|
||||||| |||| ||||||||||| |||||||||| ||||||||||||| ||| |||||| | ||||| ||||| ||||||| |
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|
| T |
29322142 |
attcgctcaaggtagaatctgaagaaattctgtttccttcgctatgcgaaatgatgggtttattcgctgacaggttgtaccggt |
29322059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 915 - 979
Target Start/End: Complemental strand, 29296069 - 29296005
Alignment:
| Q |
915 |
ttttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaa |
979 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||| || || || || ||||||||| |
|
|
| T |
29296069 |
ttttcaaatccctcgctcatcattaccctaacgcattcgctttcaagctcgcgaaacttctagaa |
29296005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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