View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_low_10 (Length: 492)
Name: NF3270_low_10
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 196 - 461
Target Start/End: Original strand, 34916193 - 34916455
Alignment:
| Q |
196 |
ggtctaaaaaggttatgatgatgtatatgtgtgcatgcaaatacaggttgttggttcagctggttggagaacatggtttgaggaaatggtctcatattgc |
295 |
Q |
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| T |
34916193 |
ggtctaaaaaggttatga---tgtatatgtgtgcatgcaaatacaggttgttggttcagctggttggagaacatggtttgaggaaatggtctcatattgc |
34916289 |
T |
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| Q |
296 |
tgagaatttgcctggtagaattggaaaacaatgcagagaaagatggcataatcatctaaagcctgacattaaggtgaattcttatttatcatattatata |
395 |
Q |
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| T |
34916290 |
tgagaatttgcctggtagaattggaaaacaatgcagagaaagatggcataatcatctaaagcctgacattaaggtgaattcttatttatcatattatata |
34916389 |
T |
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| Q |
396 |
catgcttttatctcttagcttagcacattaacactgacttaggttcaaatttgaaattctcccttt |
461 |
Q |
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| T |
34916390 |
tatgcttttatctcttagcttagcacattaacactgacttaggttcaaatttgaaattctcccttt |
34916455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 34916013 - 34916120
Alignment:
| Q |
11 |
cagagataataaggcatatccttatgcctctaggaagcctgagaaagttaaaaagaagatcaactttataaaagggcaatggacagtagaagaagatcgg |
110 |
Q |
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| T |
34916013 |
cagaaataataaggcatatccttatgcctctaggaagcctgagaaagttaaaaagaagatcaactttataaaagggcaatggacagtagaagaagatcgg |
34916112 |
T |
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| Q |
111 |
tacataca |
118 |
Q |
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| T |
34916113 |
tacataca |
34916120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 276 - 346
Target Start/End: Original strand, 43865998 - 43866068
Alignment:
| Q |
276 |
aggaaatggtctcatattgctgagaatttgcctggtagaattggaaaacaatgcagagaaagatggcataa |
346 |
Q |
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| T |
43865998 |
aggaagtggtctcatattgctctgaagttgcctggaagaatagggaaacaatgcagagaaagatggcataa |
43866068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 268 - 370
Target Start/End: Complemental strand, 21551043 - 21550941
Alignment:
| Q |
268 |
atggtttgaggaaatggtctcatattgctgagaatttgcctggtagaattggaaaacaatgcagagaaagatggcataatcatctaaagcctgacattaa |
367 |
Q |
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| T |
21551043 |
atggattgagaaaatggactgatattgctcagaaattgcctggtagaatgggaaaacagtgtagagagcgatggattaatcatctaaggccagatattaa |
21550944 |
T |
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| Q |
368 |
ggt |
370 |
Q |
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||| |
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| T |
21550943 |
ggt |
21550941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 17176140 - 17176100
Alignment:
| Q |
312 |
agaattggaaaacaatgcagagaaagatggcataatcatct |
352 |
Q |
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| T |
17176140 |
agaattggaaaacaatgcagagagagatggaataatcatct |
17176100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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