View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_low_11 (Length: 488)
Name: NF3270_low_11
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 49041506 - 49041974
Alignment:
| Q |
1 |
ctctagccaatgaaacaccaactttccctgtctcatcttctttctggtaaacacagttatagttcttgtcatcagctcctttatgggttcgaactgtatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49041506 |
ctctagccaatgaaacaccaactttccctgtctcatcttctttctggtaaacacagttatagttcttgtcatcagctcctttatgggttcgaactgtatg |
49041605 |
T |
|
| Q |
101 |
aacaagcttgtatttggaacgggttcgatcagaggacttattggaaagaagtatggcggcgccacccattcggaaaatgcaattagaaagaagcattgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49041606 |
aacaagcttgtatttggaacgggttcgatcagaggacttattggaaagaagtatggcggcgccacccattcggaaaatgcaattagaaagaagcattgaa |
49041705 |
T |
|
| Q |
201 |
cgatcatttccaaagtaccaattgagggttaaattctctgtgctcaagacgacagcgtaggaatttggatttgctttcaaaagatctttagcaagatcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49041706 |
cgatcatttccaaagtaccaattgagggttaaattctcggtgctcaagacgacagcgtaggaatttggatttgctttcaaaagatctttagcaagatcaa |
49041805 |
T |
|
| Q |
301 |
ttgaaataagaccagcactacaacccatacctccgagattatagcttttaatgtttgttcttagcttgtaatggttcacaatcattgcagaaagtgaagg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49041806 |
ttgaaataagaccagcactacaacccatacctccgagattatagcttttaatgtttgttctaagcttgtaatggttcacaatcattgcagaaagtgaagg |
49041905 |
T |
|
| Q |
401 |
agttgggttaaacaaactacaatttacaacaagaatgtcaatgtctcttggattaacacatgttttagc |
469 |
Q |
| |
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| T |
49041906 |
agttgggttaaacaaactacaatttacaacaagaatgtcaatgtctcttggattaacacctgttttagc |
49041974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 49039901 - 49039743
Alignment:
| Q |
26 |
ccctgtctcatcttctttctggtaaacacagttatagttcttgtcatcagctcctttatgggttcgaactgtatgaacaagcttgtatttggaacgggtt |
125 |
Q |
| |
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|||||| || || ||||| ||| | ||||| || ||| ||||||||| |||||| ||| |||||||| |||||| | |||||| ||||| |||| |
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| T |
49039901 |
ccctgtttcgtcctctttttggaacacacaattgtagctcttgtcattggctcctgaatgagttcgaacgctatgaagtaacttgtacttggattgggtc |
49039802 |
T |
|
| Q |
126 |
cgatcagaggacttattggaaagaagtatggcggcgccacccattcggaaaatgcaatt |
184 |
Q |
| |
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| |||| |||| |||||||| ||||||| ||| || || |||||||||||||| ||||| |
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| T |
49039801 |
ctatcaaaggatttattggagagaagtacggcagctcctcccattcggaaaatacaatt |
49039743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 8e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 261 - 464
Target Start/End: Complemental strand, 26464026 - 26463824
Alignment:
| Q |
261 |
gaatttggatttgctttcaaaagatctttagcaagatcaattgaaataagaccagcactacaacccatacctccgagattatagcttttaatgtttgttc |
360 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26464026 |
gaatttggacttgctttcaaaagat-tttagcaagatcaattgaaataagaccagcactacaacccatacctccaagattatagcttttaatgtttgttc |
26463928 |
T |
|
| Q |
361 |
ttagcttgtaatggttcacaatcattgcagaaagtgaaggagttgggttaaacaaactacaatttacaacaagaatgtcaatgtctcttggattaacaca |
460 |
Q |
| |
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||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
26463927 |
ttagcttgtcatggttcacaatcattgcagaaagggaaggagttgggttatacaaactacaatttacaacaaggatgtcaatgtctcttgaattaacaca |
26463828 |
T |
|
| Q |
461 |
tgtt |
464 |
Q |
| |
|
|||| |
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|
| T |
26463827 |
tgtt |
26463824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 7e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 261 - 381
Target Start/End: Complemental strand, 31197769 - 31197650
Alignment:
| Q |
261 |
gaatttggatttgctttcaaaagatctttagcaagatcaattgaaataagaccagcactacaacccatacctccgagattatagcttttaatgtttgttc |
360 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31197769 |
gaatttggacttgctttcaaaagat-tttagcaagatcaattgaaataagaccagcactacaacccatacctccaagattatagcttttaatgtttgttc |
31197671 |
T |
|
| Q |
361 |
ttagcttgtaatggttcacaa |
381 |
Q |
| |
|
||||||||||||| ||||||| |
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| T |
31197670 |
ttagcttgtaatgattcacaa |
31197650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 430
Target Start/End: Complemental strand, 34052114 - 34051972
Alignment:
| Q |
288 |
ttagcaagatcaattgaaataagaccagcactacaacccatacctccgagattatagcttttaatgtttgttcttagcttgtaatggttcacaatcattg |
387 |
Q |
| |
|
|||||||| ||||| || ||||| |||||||||||||||||||| || |||||||| |||| || || ||||| ||| ||||| ||||||||||| | |
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|
| T |
34052114 |
ttagcaaggtcaatagagataagtccagcactacaacccataccaccaagattataactttgaacattccctcttaacttataatgattcacaatcatag |
34052015 |
T |
|
| Q |
388 |
cagaaagtgaaggagttgggttaaacaaactacaatttacaac |
430 |
Q |
| |
|
||||||| ||||| || || ||||||||||||||||| ||||| |
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| T |
34052014 |
cagaaagagaaggtgtaggattaaacaaactacaattcacaac |
34051972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 291 - 430
Target Start/End: Complemental strand, 15237282 - 15237143
Alignment:
| Q |
291 |
gcaagatcaattgaaataagaccagcactacaacccatacctccgagattatagcttttaatgtttgttcttagcttgtaatggttcacaatcattgcag |
390 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||||||||| || |||||||| || || ||| ||| | ||| ||||| ||||||||||| |||| |
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| T |
15237282 |
gcaaggtcaatagagataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcag |
15237183 |
T |
|
| Q |
391 |
aaagtgaaggagttgggttaaacaaactacaatttacaac |
430 |
Q |
| |
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|||| || || ||||| ||||||||||||||||| ||||| |
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| T |
15237182 |
aaagagatggtgttggattaaacaaactacaattcacaac |
15237143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 433
Target Start/End: Complemental strand, 26452900 - 26452751
Alignment:
| Q |
284 |
atctttagcaagatcaattgaaataagaccagcactacaacccatacctccgagattatagcttttaatgtttgttcttagcttgtaatggttcacaatc |
383 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||||||||||||| || | |||| | ||| |||| || |||| || || | ||| |||||| |
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|
| T |
26452900 |
atctttagcaagatcaatagctataacaccagcactacaacccataccacccaaattaaaacttctaatattaccccttaatttatatttgttaacaatc |
26452801 |
T |
|
| Q |
384 |
attgcagaaagtgaaggagttgggttaaacaaactacaatttacaacaag |
433 |
Q |
| |
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|| || |||||||| || ||||| ||||||||||||||||| |||||||| |
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|
| T |
26452800 |
atagctgaaagtgatggcgttggattaaacaaactacaattaacaacaag |
26452751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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