View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_low_16 (Length: 357)
Name: NF3270_low_16
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 54024143 - 54023980
Alignment:
| Q |
17 |
agattcctcaaccaatttaatgaccatctactaacatcactcttcaccattccaacttctccaacttttctttctttatccaaagacaatggaaataagt |
116 |
Q |
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| T |
54024143 |
agattcctcaaccaatttaatgaccatctactaacatcaatattcaccattccaacttctccaacttttctttctttatccaaagacaatggaaataagt |
54024044 |
T |
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| Q |
117 |
tgctgaagatattttgagagtattttaggggaaaatggagaaatgagaaaaggagtctaagggt |
180 |
Q |
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| T |
54024043 |
tgctgaagatattttgagagtattttaggggaaaatggagaaatgagaaaaggagtctaagggt |
54023980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 190 - 344
Target Start/End: Complemental strand, 54023920 - 54023767
Alignment:
| Q |
190 |
attagctttatttaaattttataattgagagcttagttttaagtttcatattatataatccaattatgggaaaaatgttnnnnnnnnttctctttaaatt |
289 |
Q |
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| T |
54023920 |
attagctttatttgaattttataattgagagcttagttttaagtttcatattatataatccgattatgggaaaaatgtt-aaaaaaattctctttaaatt |
54023822 |
T |
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| Q |
290 |
ttaacatgaatacccaagcccgaaataactaaagtgtatgattattgttcttctc |
344 |
Q |
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| T |
54023821 |
ttaacatgaatatccaagcccgaaataactaaagtgtatgattattgctcttctc |
54023767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 138 - 336
Target Start/End: Complemental strand, 54027268 - 54027071
Alignment:
| Q |
138 |
attttaggggaaaatggagaaatgagaaaaggagtctaagggtgacttatatattagctttatttaaattttataattgagagcttagttttaagtttca |
237 |
Q |
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| T |
54027268 |
atttttggggaaaatggagaaatgagaaaaggagtctaatggtgacttatatattggcattatttgaattttataattcagagcatagttttaagtttca |
54027169 |
T |
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| Q |
238 |
tattatataatccaattatgggaaaaatgttnnnnnnnnttctctttaaattttaacatgaatacccaagcccgaaataactaaagtgtatgattattg |
336 |
Q |
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| T |
54027168 |
tattatataatccgattatgagaaaattgat-aaaaaaattctctttaaactttaacatgaatacccaaactcgaaataattgaagtgtatgaatattg |
54027071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 54020636 - 54020537
Alignment:
| Q |
17 |
agattcctcaaccaatttaatgaccatctactaacatcactcttcaccattccaacttctccaacttttctttctttatccaaagacaatggaaataagt |
116 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54020636 |
agattcctcaaccaatttaatgaccatctgctaacatcactcttcaccattccaacttctccaacttttctttctttatccaaagacaatctaaataagt |
54020537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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