View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3270_low_2 (Length: 929)

Name: NF3270_low_2
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3270_low_2
NF3270_low_2
[»] chr4 (1 HSPs)
chr4 (19-895)||(25793719-25794594)
[»] chr3 (16 HSPs)
chr3 (251-460)||(10377491-10377703)
chr3 (327-445)||(10440829-10440948)
chr3 (234-324)||(9996272-9996362)
chr3 (234-324)||(10217289-10217379)
chr3 (376-478)||(10093640-10093743)
chr3 (376-478)||(10200522-10200625)
chr3 (195-281)||(10440952-10441038)
chr3 (276-338)||(10658561-10658623)
chr3 (40-81)||(10136866-10136907)
chr3 (19-60)||(10221388-10221429)
chr3 (19-77)||(10075294-10075350)
chr3 (19-70)||(10377883-10377934)
chr3 (205-267)||(13845623-13845685)
chr3 (194-301)||(10532452-10532562)
chr3 (214-254)||(10667719-10667759)
chr3 (47-81)||(10134207-10134241)
[»] chr5 (2 HSPs)
chr5 (234-324)||(26796760-26796850)
chr5 (19-60)||(26816746-26816787)
[»] chr8 (1 HSPs)
chr8 (205-294)||(11488796-11488888)
[»] chr2 (1 HSPs)
chr2 (207-240)||(26910597-26910630)


Alignment Details
Target: chr4 (Bit Score: 828; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 828; E-Value: 0
Query Start/End: Original strand, 19 - 895
Target Start/End: Original strand, 25793719 - 25794594
Alignment:
Q  19 ctgtcgaccgtgcccttaaaggatcctctctctttggaatgttcgctttgaaggtaatcataaccatgaccgtgccatcacgatgttgattttatttatc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25793719 ctgtcgaccgtgcccttaaaggatcctctctctttggaatgttcgctttgaaggtaatcataaccatgaccgtgccatcacgatgttgattttatttatc 25793818  T
Q  119 taactatttatagatatttagttttaacaatccaactgttcaattatcttaacgaacatatgtctatattgccgccttttcaggagaggcctaagtggat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25793819 taactatttatagatatttagttttaacaatccaactgttcaattatcttaacgaacatatgtctatattgccgccttttcaggagaggcctaagtggat 25793918  T
Q  219 gaaaatcagctcacttgatgaactgaaaacaaaagtagggcatgttattgtaatgattcttcttgtaaaaatgtttgagaggagcaaattggttgtcatt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25793919 gaaaatcagctcacttgatgaactgaaaacaaaagtagggcatgttattgtaatgattcttcttgtaaaaatgtttgagaggagcaaattggttgtaatt 25794018  T
Q  319 gccacaggattggatttactaagttattcagtttgtattttcttatcatctgcatctttgtatatcctccataatttgcataagcaagattagaatatac 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  25794019 gccacaggattggatttactaagttattcagtttgtattttcttatcatctgcatctttgtatatccttcataatctgcataagcaagattagaatatac 25794118  T
Q  419 tagcattgtaatattctcaattcatatatgtaagtaaacactcatatggtccagaatattattgctgaaaatttcttttgttcattatacaacatttata 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25794119 tagcattgtaatattctcaattcatatatgtaagtaaacactcatatggtccagaatattattgctgaaaatttcttttgttcattatacaacatttata 25794218  T
Q  519 agaaatggaagttgttggccaactgtggttggcacacatggtaagactttcctctcatacggattacaacttaggtttgagtccaaaattccatacttgg 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25794219 agaaatggaagttgttggccaactgtggttggcacacatggtaagactttcctctcatacggattacaacttgggtttgagtccaaaattccatacttgg 25794318  T
Q  619 taggttatctgtaaattctgttgtaaattctcaatgagtcagaaatctctttgattggctataatataagagctgatacaaaaaatttacaaaataagga 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25794319 taggttatctgtaaattctgttgtaaattctcaatgagtcagaaatctctttgattggctataatataagagctgatac-aaaaatttacaaaataagga 25794417  T
Q  719 ccaacactccctttttgctccccatcttgaccatatgatcataannnnnnnaaacaaagacaatatcaagaggggtgttcggattccagatttcaaatgt 818  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25794418 ccaacactccctttttgctccccatcttgaccatatgatcataatttttttaaacaaagacaatatcaagaggggtgttcggattccagatttcaaatgt 25794517  T
Q  819 gtaaagattctgaaaaaacagataccgtggctaaatttttcccttgacggattctaaaatccgaaaatcgagaggca 895  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25794518 gtaaagattctgaaaaaacagataccgtggctaattttttcccttgacggattctaaaatccgaaaatcgagaggca 25794594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 251 - 460
Target Start/End: Complemental strand, 10377703 - 10377491
Alignment:
Q  251 aagtagggcatgttattgtaatgattcttcttgtaaaaatgtttgagaggagcaaattggttgtcattgccacaggattggatttactaagttattcagt 350  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||  ||  ||||||||||||||||| ||||||||  | ||||||||    
T  10377703 aagtggggcatgttattgtaatgattcttcttgtaaaaatatttgagaggagcaaaacggccgtcattgccacaggattagatttacttgggtattcagt 10377604  T
Q  351 ttgtattttcttatc--atctgcatctttgtatatcctccataatttgcataagcaagattagaatatact-agcattgtaatattctcaattcatatat 447  Q
     ||||||||||||||  |||  |||| ||||||||||| ||||||||||| ||||||||||||| | |||| | ||||||||||||||||| |||||| |    
T  10377603 ctgtattttcttatcatatcgacatcattgtatatcctacataatttgcacaagcaagattagagtgtactaaacattgtaatattctcaaatcatatct 10377504  T
Q  448 gtaagtaaacact 460  Q
    |||||| ||||||    
T  10377503 gtaagtgaacact 10377491  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 327 - 445
Target Start/End: Complemental strand, 10440948 - 10440829
Alignment:
Q  327 attggatttactaagttattcagtttgtattttcttatcatctgcatctttgtatatcctccataatttgcataagcaagattagaatatacta-gcatt 425  Q
    |||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||| |||||| | ||||| |||||    
T  10440948 attggatttacttagttattcagtctgtattttcttatcatcggcatcattgtatatcctacataatttgcacaagcaaaattagagtgtactaggcatt 10440849  T
Q  426 gtaatattctcaattcatat 445  Q
    ||||||||||||| ||||||    
T  10440848 gtaatattctcaaatcatat 10440829  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 234 - 324
Target Start/End: Original strand, 9996272 - 9996362
Alignment:
Q  234 tgatgaactgaaaacaaaagtagggcatgttattgtaatgattcttcttgtaaaaatgtttgagaggagcaaattggttgtcattgccaca 324  Q
    ||||||| ||||||||||||| |  |||||||||||||||||||||| |||||||||||||||||||||  || |||||||||||||||||    
T  9996272 tgatgaattgaaaacaaaagtggaccatgttattgtaatgattcttcctgtaaaaatgtttgagaggagtgaaatggttgtcattgccaca 9996362  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 234 - 324
Target Start/End: Original strand, 10217289 - 10217379
Alignment:
Q  234 tgatgaactgaaaacaaaagtagggcatgttattgtaatgattcttcttgtaaaaatgtttgagaggagcaaattggttgtcattgccaca 324  Q
    ||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||   || |||||||||||||||||    
T  10217289 tgatgaattgaaaacaaaagtggagcatgttattgtaatgattcttcctgtaaaaatgtttgagaggaatgaaatggttgtcattgccaca 10217379  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 10093640 - 10093743
Alignment:
Q  376 ttgtatatcctccataatttgcataagcaagattagaatatactag-cattgtaatattctcaattcatatatgtaagtaaacactcatatggtccagaa 474  Q
    ||||| ||||| | |||||||||||||||||| ||||||  |  || |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||    
T  10093640 ttgtaaatccttcttaatttgcataagcaagagtagaatgcagcaggcattgtaatattctcaattcatatatgtaagtgaacactcatatggcccaaaa 10093739  T
Q  475 tatt 478  Q
    ||||    
T  10093740 tatt 10093743  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 10200522 - 10200625
Alignment:
Q  376 ttgtatatcctccataatttgcataagcaagattagaatatactag-cattgtaatattctcaattcatatatgtaagtaaacactcatatggtccagaa 474  Q
    ||||| ||||| | |||||||||||||||||| ||||||  |  || |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||    
T  10200522 ttgtaaatccttcttaatttgcataagcaagagtagaatgcagcaggcattgtaatattctcaattcatatatgtaagtgaacactcatatggcccaaaa 10200621  T
Q  475 tatt 478  Q
    ||||    
T  10200622 tatt 10200625  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 10441038 - 10440952
Alignment:
Q  195 ttttcaggagaggcctaagtggatgaaaatcagctcacttgatgaactgaaaacaaaagtagggcatgttattgtaatgattcttct 281  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||||| |||| | |||||| |||||||| | ||| |||||||||||    
T  10441038 ttttcaggaaaggcctaagtggatgacaataagctcacttgatgaattgaagaaaaaagtggggcatgtcactgtgatgattcttct 10440952  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 10658561 - 10658623
Alignment:
Q  276 tcttcttgtaaaaatgtttgagaggagcaaattggttgtcattgccacaggattggatttact 338  Q
    |||| |||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||    
T  10658561 tctttttgtaaaaatgtttgagaggagcaaaatggttgtcactgccacaggattagatttact 10658623  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 10136866 - 10136907
Alignment:
Q  40 gatcctctctctttggaatgttcgctttgaaggtaatcataa 81  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  10136866 gatcctctctctttggaatgtttgctttgaaggtaatcataa 10136907  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 10221388 - 10221429
Alignment:
Q  19 ctgtcgaccgtgcccttaaaggatcctctctctttggaatgt 60  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  10221388 ctgtcgaccgtgcccttaaaggatcctctctcttcggaatgt 10221429  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 10075294 - 10075350
Alignment:
Q  19 ctgtcgaccgtgcccttaaaggatcctctctctttggaatgttcgctttgaaggtaatc 77  Q
    |||| |||||| ||||||||||||||||||||  ||||||||| |||||||||||||||    
T  10075294 ctgtggaccgttcccttaaaggatcctctctc--tggaatgtttgctttgaaggtaatc 10075350  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 10377934 - 10377883
Alignment:
Q  19 ctgtcgaccgtgcccttaaaggatcctctctctttggaatgttcgctttgaa 70  Q
    |||| |||||||| |||||||| ||||||||||| |||||||||||||||||    
T  10377934 ctgttgaccgtgcgcttaaagggtcctctctcttcggaatgttcgctttgaa 10377883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 13845685 - 13845623
Alignment:
Q  205 aggcctaagtggatgaaaatcagctcacttgatgaactgaaaacaaaagtagggcatgttatt 267  Q
    |||||||||||||||||||||||| | |||| |||| |||| |||||||| ||| ||||||||    
T  13845685 aggcctaagtggatgaaaatcagcccgcttgttgaattgaagacaaaagtggggaatgttatt 13845623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 301
Target Start/End: Original strand, 10532452 - 10532562
Alignment:
Q  194 cttttcaggagaggcctaa---gtggatgaaaatcagctcacttgatgaactgaaaacaaaagtagggcatgttattgtaatgattcttcttgtaaaaat 290  Q
    |||| ||||||||||||||   |||||| |||||| | ||| |||||||| |||| ||||||||  |||||||| |  | |||||||||||||||||  |    
T  10532452 ctttgcaggagaggcctaataagtggataaaaatccgttcaattgatgaattgaagacaaaagtgaggcatgttgtcatcatgattcttcttgtaaactt 10532551  T
Q  291 gtttgagagga 301  Q
    |||| ||||||    
T  10532552 gttttagagga 10532562  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 10667719 - 10667759
Alignment:
Q  214 tggatgaaaatcagctcacttgatgaactgaaaacaaaagt 254  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  10667719 tggatgaaaatcagctcacttgatgaaatgaagacaaaagt 10667759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 10134207 - 10134241
Alignment:
Q  47 tctctttggaatgttcgctttgaaggtaatcataa 81  Q
    ||||||||||||||| |||||||||||||||||||    
T  10134207 tctctttggaatgtttgctttgaaggtaatcataa 10134241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 234 - 324
Target Start/End: Original strand, 26796760 - 26796850
Alignment:
Q  234 tgatgaactgaaaacaaaagtagggcatgttattgtaatgattcttcttgtaaaaatgtttgagaggagcaaattggttgtcattgccaca 324  Q
    ||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||   || |||||||||||||||||    
T  26796760 tgatgaattgaaaacaaaagtggagcatgttattgtaatgattcttcctgtaaaaatgtttgagaggaatgaaatggttgtcattgccaca 26796850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 26816746 - 26816787
Alignment:
Q  19 ctgtcgaccgtgcccttaaaggatcctctctctttggaatgt 60  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  26816746 ctgtcgaccgtgcccttaaaggatcctctctcttcggaatgt 26816787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 205 - 294
Target Start/End: Original strand, 11488796 - 11488888
Alignment:
Q  205 aggcctaagtggatgaaaatcagctcacttgatgaactgaaaacaaaagtagggcatgtta---ttgtaatgattcttcttgtaaaaatgttt 294  Q
    |||||||| ||||| |||||||||||| |||||||| |||| |||||||| | ||||||||   || | ||||||||||||||||||||||||    
T  11488796 aggcctaaatggatcaaaatcagctcatttgatgaattgaagacaaaagtggagcatgttatttttatcatgattcttcttgtaaaaatgttt 11488888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 26910597 - 26910630
Alignment:
Q  207 gcctaagtggatgaaaatcagctcacttgatgaa 240  Q
    |||||||| |||||||||||||||||||||||||    
T  26910597 gcctaagttgatgaaaatcagctcacttgatgaa 26910630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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