View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3270_low_20 (Length: 274)
Name: NF3270_low_20
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 27722671 - 27722915
Alignment:
| Q |
13 |
aatatgacaaaatgagcatgcaatcttcatcaaaggtatcacacataacagagttacatggactgtttactgcaagatcacgcaaccgagatctggtagg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27722671 |
aatatgacaaaatgagcatgcaatcttcatcaaaggtatcacacataacagagttacatggactgtttactgcaagatcacgcaaccgagatctggtagg |
27722770 |
T |
|
| Q |
113 |
caaacatttacgacatatgcatcaaatcagatttttgactttaggcggtgcccctaactttcaaatgagattccatcgaccatgaattctaaggtgagtt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27722771 |
caaacatttacgacatatgcatcaaatcagatttttgactttaggcagtgcccctaactttcaaatgagattccatcgaccatgaattctaaggtgagtt |
27722870 |
T |
|
| Q |
213 |
ggatcaattaattcatcaatacagtgtcgataagcacttctaact |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27722871 |
ggatcaattaattcatcaatacagtgtcgataagcacttctaact |
27722915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 27734624 - 27734862
Alignment:
| Q |
17 |
tgacaaaatgagcatgcaatcttcatcaaaggtatcacacataacagagttacat--ggactgtttactgcaagatcacgcaaccgagatctggtaggca |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
27734624 |
tgacaaaatgagtatgcaatcttcatcaaaggtattacacataacagagttacatatggacagtttactgcaagatcatgcaacctagatctcgtaggca |
27734723 |
T |
|
| Q |
115 |
aacatttacgacatatgcatcaaatcagatttt-----tgac---------tttaggcggtgcccctaactttcaaatgagattccatcgaccatgaatt |
200 |
Q |
| |
|
| |||||||||||||| ||||||||||||||| |||| || ||| ||| ||||||||||||||||||||||||||||||||| | | |
|
|
| T |
27734724 |
accatttacgacatatctatcaaatcagattttggcagtgaccataacagagtttggccgtgaccctaactttcaaatgagattccatcgaccatggact |
27734823 |
T |
|
| Q |
201 |
ctaaggtgagttggatcaattaattcatcaatacagtgt |
239 |
Q |
| |
|
|| | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
27734824 |
ttaggatgagttggatcaattaatttatcaatacagtgt |
27734862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 27722521 - 27722557
Alignment:
| Q |
31 |
tgcaatcttcatcaaaggtatcacacataacagagtt |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27722521 |
tgcaatcttcatcaaaggtatcacacataacacagtt |
27722557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 14680403 - 14680641
Alignment:
| Q |
17 |
tgacaaaatgagcatgcaatcttcatcaaaggtatcacacataacagagttacatggactgtttactgcaagatcacgcaaccgagatctggtaggcaaa |
116 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| |||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14680403 |
tgacaaaaggagtatgcaatcttcatcaaaggtatcaaacataacacatttacatggactgtttattgcaagatcacgcaaccgagatctggtaggcaaa |
14680502 |
T |
|
| Q |
117 |
catttacgacatatgcatcaaatcagatttttgactttaggcggtgcccctaactttcaaatgagattccatcgaccatgaattctaaggtgagttggat |
216 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| | || | |||||||||| |
|
|
| T |
14680503 |
catttacgacatatctgccaaatcagatttttgactttagctggtgcccataactttcaaatgagattccatcgaccatgaactatatgatgagttggat |
14680602 |
T |
|
| Q |
217 |
caattaattcatcaatacagtgtcgataagcacttctaa |
255 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
14680603 |
caattaattcatcaatacagtgtcggtgagcacgtctaa |
14680641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University