View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_low_23 (Length: 267)
Name: NF3270_low_23
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 43416303 - 43416549
Alignment:
| Q |
6 |
ttataagagaatatgagtcaacaaaaattgatgtattcttctaaagaaaagcaaaagtcgacggttcttagcttcccaattgcatggccaattacatgca |
105 |
Q |
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| T |
43416303 |
ttataagagaatatgagtcaacaaaaattgatgtattcttctaaagaaaagcaaaagtcgacggttcttagcttcccaattgcatggccaattacatgca |
43416402 |
T |
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| Q |
106 |
acacctcctcaagtgctacattcttgaatannnnnnnactctagaaactgtagtaagatatagtgcacatagaataacaaacaggggaataatcattcat |
205 |
Q |
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| T |
43416403 |
acacctcctcaagtgctacattcttgaatatttttttactctagaaactgtagtaagatatagtgcacatagaataacaaacaggggaataaccattcat |
43416502 |
T |
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| Q |
206 |
gtaaccaaaagaggaaagaaaaataagagggaaaactttcaatgatt |
252 |
Q |
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| T |
43416503 |
gtaaccaaaagaggaaagaaaaataagagggaaaactttcaatgatt |
43416549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 143 - 252
Target Start/End: Original strand, 43401755 - 43401866
Alignment:
| Q |
143 |
actctagaaactgtagtaagatatagtgcacatagaataacaaacaggggaataatcattcatgtaaccaaaagagg--aaagaaaaataagagggaaaa |
240 |
Q |
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| T |
43401755 |
actctataaactatagtaagatatggtgcacatagaataacaaagaggggaataatcaatcatgtaaccaaaagagggaaaaaaaatataagagggaaaa |
43401854 |
T |
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| Q |
241 |
ctttcaatgatt |
252 |
Q |
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| T |
43401855 |
ttttcaatgatt |
43401866 |
T |
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