View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3270_low_27 (Length: 257)

Name: NF3270_low_27
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3270_low_27
NF3270_low_27
[»] chr5 (8 HSPs)
chr5 (1-252)||(34232744-34232995)
chr5 (5-197)||(34240491-34240680)
chr5 (5-195)||(42128843-42129030)
chr5 (5-147)||(42117767-42117909)
chr5 (5-183)||(42123470-42123645)
chr5 (49-192)||(41713547-41713691)
chr5 (5-116)||(41571965-41572076)
chr5 (5-116)||(41617604-41617715)
[»] chr4 (1 HSPs)
chr4 (5-195)||(11118103-11118290)
[»] chr2 (3 HSPs)
chr2 (5-183)||(12248432-12248607)
chr2 (5-183)||(11994322-11994497)
chr2 (14-138)||(32681868-32681992)
[»] chr3 (1 HSPs)
chr3 (20-181)||(8523080-8523238)
[»] chr6 (2 HSPs)
chr6 (13-199)||(24140786-24140968)
chr6 (5-199)||(25522977-25523168)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 34232744 - 34232995
Alignment:
Q  1 tggattcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagtt 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34232744 tggattcaaactttgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagtt 34232843  T
Q  101 tagttatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagccatgaaggctgttactcaagtggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34232844 tagttatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagccatgaaggctgttactcaagtggg 34232943  T
Q  201 agagaataccagtttgctatatgtacaagattcagcagggtcctatgcttct 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34232944 agagaataccagtttgctatatgtacaagattcagcagggtcctatgattct 34232995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 197
Target Start/End: Original strand, 34240491 - 34240680
Alignment:
Q  5 ttcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagtttagt 104  Q
    |||||||||| ||| | ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||    
T  34240491 ttcaaactctccaatacttgaaagtgctggttttgcgagacaataagttgcatggtcacattgccaatttaaagatcaggcatccatttcctagtttagt 34240590  T
Q  105 tatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagccatgaaggctgttactcaagt 197  Q
    |||||||||||||||  | |||||||||| |||||||||||||   |||| |||||| ||| | | |||||||||||||   |||||||||||    
T  34240591 tatttttgatatctcaagcaataactttactggtccgctacca---aaagcctatttaaaatattttgaagccatgaagaaagttactcaagt 34240680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 195
Target Start/End: Complemental strand, 42129030 - 42128843
Alignment:
Q  5 ttcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagtttagt 104  Q
    ||||||| |||||| ||||||||||| | ||||| | ||| || ||||||||||||  |||||| ||| ||||||||||| |||||||||| |||||| |    
T  42129030 ttcaaacactgcaatatttgaaagtgttggttttgcaagacaacaagttgcatggtatcattgctaatctaaagatcaagcatccatttccaagtttaat 42128931  T
Q  105 tatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagccatgaaggctgttactcaa 195  Q
    ||||||||||||||| || ||||||||||| ||||||||||||   |||| |||||| ||||||| |||||||||||||  ||||||||||    
T  42128930 tatttttgatatctcaggcaataactttagcggtccgctacca---aaagcctattttaaaaagtttgaagccatgaagaatgttactcaa 42128843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 42117909 - 42117767
Alignment:
Q  5 ttcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagtttagt 104  Q
    ||||||| || ||| ||||| ||||| | ||||||| ||| |||||||||||||||  |||| | |||  |||||||||| |||||||||| |||||| |    
T  42117909 ttcaaacactacaatatttgcaagtgttggttttacaagacaataagttgcatggtatcattcctaatccaaagatcaagcatccatttccaagtttaat 42117810  T
Q  105 tatttttgatatctcgggaaataactttagtggtccgctacca 147  Q
    ||||||| ||||||| ||||||||||||||  |||||||||||    
T  42117809 tattttttatatctcaggaaataactttagctgtccgctacca 42117767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 183
Target Start/End: Complemental strand, 42123645 - 42123470
Alignment:
Q  5 ttcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagtttagt 104  Q
    ||||||| || |||||||||||||| || ||||| ||||| |||||||| ||||||| ||| ||||||||||||||  ||  || |||||| || ||| |    
T  42123645 ttcaaacacttcaagatttgaaagtactggttttgcgagacaataagtttcatggtcccatcgccaatttaaagattgagcgtctatttccaagcttaat 42123546  T
Q  105 tatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagccatgaag 183  Q
     |||||||||||||| |||||||||||| |||||   ||||||   |||| |||||  ||||| |||||||||||||||    
T  42123545 catttttgatatctctggaaataactttggtggttttctacca---aaagcctattcaaaaaattatgaagccatgaag 42123470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 41713547 - 41713691
Alignment:
Q  49 aagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagttt----agttatttttgatatctcgggaaataactttagtggtccgcta 144  Q
    |||||||||||||  ||| ||||||||||||||||  ||||||||||||||||    | | ||| ||||||||||||| ||| |||| ||||||||||||    
T  41713547 aagttgcatggtcctatttccaatttaaagatcaaacatccatttcccagtttattaattaattgttgatatctcgggcaatgacttcagtggtccgcta 41713646  T
Q  145 ccaccgaaagactatttcaaaaagtatgaagccatgaaggctgttact 192  Q
    |||   |||| |||||| ||||| ||| || ||||||||  |||||||    
T  41713647 cca---aaagcctatttaaaaaattatcaaaccatgaagaatgttact 41713691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 41571965 - 41572076
Alignment:
Q  5 ttcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagtttagt 104  Q
    |||||||| ||||| ||||| |||| || ||||| ||||| ||||| ||| ||||||  ||||||  | |||| |||||| |||||||||| |||||| |    
T  41571965 ttcaaactatgcaatatttggaagtactggttttgcgagagaataatttgtatggtcctattgccggtgtaaatatcaagcatccatttcctagtttaat 41572064  T
Q  105 tatttttgatat 116  Q
    ||||||||||||    
T  41572065 tatttttgatat 41572076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 41617604 - 41617715
Alignment:
Q  5 ttcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagtttagt 104  Q
    |||||||| ||||| ||||| |||| || ||||| ||||| ||||| ||| ||||||  ||||||  | |||| |||||| |||||||||| |||||| |    
T  41617604 ttcaaactatgcaatatttggaagtactggttttgcgagagaataatttgtatggtcctattgccggtgtaaatatcaagcatccatttcctagtttaat 41617703  T
Q  105 tatttttgatat 116  Q
    ||||||||||||    
T  41617704 tatttttgatat 41617715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 195
Target Start/End: Complemental strand, 11118290 - 11118103
Alignment:
Q  5 ttcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagtttagt 104  Q
    |||||||  ||| ||||||||||||  | ||||| ||||| |||||||||||||||| |||||  |||||||||||| || ||| |||||| || ||| |    
T  11118290 ttcaaacattgccagatttgaaagtattggttttgcgagacaataagttgcatggtcccattgaaaatttaaagatcgagcatctatttccaagcttaat 11118191  T
Q  105 tatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagccatgaaggctgttactcaa 195  Q
     ||||||||||||||||| || | ||||||||||   ||||||   |||| |||||| ||||| |||||||| ||||||  ||||||||||    
T  11118190 catttttgatatctcgggcaacagctttagtggttttctacca---aaagcctatttaaaaaactatgaagctatgaagaatgttactcaa 11118103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 183
Target Start/End: Complemental strand, 12248607 - 12248432
Alignment:
Q  5 ttcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagtttagt 104  Q
    ||||||| |||||||||||||||||  |  |  | ||||| |||||||||||||||  |||||  ||| |||| |  ||| |||||||||| ||||||      
T  12248607 ttcaaacactgcaagatttgaaagttttgctgctgcgagacaataagttgcatggtatcattgttaatctaaatacaaagcatccatttccaagtttaac 12248508  T
Q  105 tatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagccatgaag 183  Q
    ||||||||||||||| || ||||||||||||||||||||||||   || | ||||||  |||||| |||||||||||||    
T  12248507 tatttttgatatctcaggcaataactttagtggtccgctacca---aatgcctattttgaaaagtttgaagccatgaag 12248432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 11994322 - 11994497
Alignment:
Q  5 ttcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagtttagt 104  Q
    ||||||| |||||||||||||||||  |  |  | ||||| ||||||||||||| |  |||||  ||| |||| |  ||| |||||||||| ||||||      
T  11994322 ttcaaacactgcaagatttgaaagttttgctgctgcgagacaataagttgcatgatatcattgttaatctaaatacaaagcatccatttccaagtttaac 11994421  T
Q  105 tatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagccatgaag 183  Q
    ||||||||||||||  || ||||||||||||||||||||||||   || | ||||||  |||||| |||||||||||||    
T  11994422 tatttttgatatctaaggcaataactttagtggtccgctacca---aatgcctattttgaaaagtttgaagccatgaag 11994497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 32681868 - 32681992
Alignment:
Q  14 tgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagtttagttatttttga 113  Q
    ||||||||||||||||  | ||||| || || || ||||||||||||| ||||| ||||||||||| | |  ||| |||||| || ||| | ||||||||    
T  32681868 tgcaagatttgaaagtattggttttgcgtgacaacaagttgcatggtcccattgtcaatttaaagaacgaacatctatttcctagcttaatcatttttga 32681967  T
Q  114 tatctcgggaaataactttagtggt 138  Q
    |||||| ||||| ||||| ||||||    
T  32681968 tatctctggaaacaacttcagtggt 32681992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 8523238 - 8523080
Alignment:
Q  20 atttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagtttagttatttttgatatctc 119  Q
    ||||||||||| |  |||| ||||| |||||||||||||||  |||||  |||  |||||||||| ||||||||||   ||||  |||||||||||||||    
T  8523238 atttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaatccaaagatcaagcatccatttccagatttaactatttttgatatctc 8523139  T
Q  120 gggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagccatga 181  Q
        ||||||||||||||||| ||||||   |||  |||||||||||||| |||||||||||    
T  8523138 aaacaataactttagtggtcctctacca---aaatcctatttcaaaaagtttgaagccatga 8523080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 24140968 - 24140786
Alignment:
Q  13 ctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagtttagttatttttg 112  Q
    |||||| ||||| ||||  | ||||| ||||| |||||||| |||||||||||  |||||||||||||  || ||  |||||| || ||| | ||||| |    
T  24140968 ctgcaatatttggaagtattggttttgcgagacaataagttacatggtcacatcaccaatttaaagatgtagcatttatttccaaggttaatcatttt-g 24140870  T
Q  113 atatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagccatgaaggctgttactcaagtgg 199  Q
    ||||||| ||||| ||||| ||||||   || |||   |||| |||||| ||||| |||||||||||||||| ||||||||||||||    
T  24140869 atatctctggaaacaacttcagtggttttctgcca---aaagcctatttaaaaaattatgaagccatgaaggatgttactcaagtgg 24140786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 25522977 - 25523168
Alignment:
Q  5 ttcaaactctgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatcaagaatccatttcccagtttagt 104  Q
    |||||||  |||| |||||||||||| | ||||| ||||| || ||||||||||||  | ||| ||||||||| |||||| || ||||||  |||||| |    
T  25522977 ttcaaacaatgcaggatttgaaagtgttggttttgcgagacaacaagttgcatggttcccttgtcaatttaaaaatcaagcattcatttcaaagtttaat 25523076  T
Q  105 tatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagccatgaaggctgttactcaagtgg 199  Q
     |||||||||||||| || || || ||  |||||   ||||||   |||| |||||| | ||| |||||||||||||||  ||||||||||||||    
T  25523077 catttttgatatctcaggtaacaatttaggtggttttctacca---aaagcctatttaagaaattatgaagccatgaagaatgttactcaagtgg 25523168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University