View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3270_low_28 (Length: 257)

Name: NF3270_low_28
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3270_low_28
NF3270_low_28
[»] chr8 (3 HSPs)
chr8 (5-247)||(114729-114971)
chr8 (7-92)||(178821-178906)
chr8 (116-175)||(15907689-15907749)
[»] chr4 (2 HSPs)
chr4 (5-92)||(37437612-37437699)
chr4 (141-212)||(49668568-49668638)
[»] chr2 (3 HSPs)
chr2 (147-218)||(8198656-8198727)
chr2 (147-218)||(8203416-8203487)
chr2 (135-175)||(4558697-4558738)
[»] chr1 (1 HSPs)
chr1 (150-229)||(26706352-26706432)
[»] chr7 (1 HSPs)
chr7 (149-218)||(18128528-18128598)
[»] chr6 (2 HSPs)
chr6 (193-230)||(16419660-16419697)
chr6 (193-230)||(33547811-33547848)
[»] chr5 (2 HSPs)
chr5 (193-230)||(13953520-13953557)
chr5 (147-230)||(38458803-38458885)
[»] chr3 (1 HSPs)
chr3 (186-230)||(9357887-9357931)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 247
Target Start/End: Complemental strand, 114971 - 114729
Alignment:
Q  5 tgttctaatattcactatctttaactttcgtcgcgttgttggtctaatgttttagttatttgaaaattatatgtattgaataactttttcctaatgtgtt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  114971 tgttctaatattcactatctttaactttcgtcgcgttgttggtctaatgttttagttatttgaaaattatatgtattgaataactttttcctaatgtgtt 114872  T
Q  105 agaatgaaggttaaattacacctgaagttccttaagtaatttattgtaataaattggtctttaagtt-ttttcgtaactattagatccttttaagttaat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |||||||||||    
T  114871 agaatgaaggttaaattacacctgaagttccttaagtaatttattgtaataaattggtctttaagtttttttcataactattagat-catttaagttaat 114773  T
Q  204 taattgtaataagtttgtcatttaagtccctcttaggtcctttg 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  114772 taattgtaataagtttgtcatttaagtccctcttaggtcctttg 114729  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 178821 - 178906
Alignment:
Q  7 ttctaatattcactatctttaactttcgtcgcgttgttggtctaatgttttagttatttgaaaattatatgtattgaataactttt 92  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||  | | | ||||||||||||||||| ||||||    
T  178821 ttctaatattcactatcttcaactttcgtcgagttgttgatctaatgttttagtcctcttataattatatgtattgaatcactttt 178906  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 15907689 - 15907749
Alignment:
Q  116 taaattacacctgaagttccttaagtaattta-ttgtaataaattggtctttaagtttttt 175  Q
    ||||||||||| ||| | | |||||| ||||| |||| |||||||||||||||||||||||    
T  15907689 taaattacaccagaaatcctttaagttatttacttgtgataaattggtctttaagtttttt 15907749  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 37437699 - 37437612
Alignment:
Q  5 tgttctaatattcactatctttaactttcgtcgcgttgttggtctaatgttttagttatttgaaaattatatgtattgaataactttt 92  Q
    ||||||||||||||||||||| |||||||| ||||| |||| ||||   ||||||||||| |||||||||||||||||||||||||||    
T  37437699 tgttctaatattcactatcttcaactttcgccgcgtcgttgatctagacttttagttattagaaaattatatgtattgaataactttt 37437612  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 49668638 - 49668568
Alignment:
Q  141 taatttattgtaataaattggtctttaagttttttcgtaactattagatccttttaagttaattaattgtaa 212  Q
    ||||| ||||||||||||||||||||| ||||||  | | | ||||||| ||||||||||| ||||||||||    
T  49668638 taattaattgtaataaattggtctttatgtttttatgcaccaattagat-cttttaagttatttaattgtaa 49668568  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 8198727 - 8198656
Alignment:
Q  147 attgtaataaattggtctttaagtttttt-cgtaactattagatccttttaagttaattaattgtaataagtt 218  Q
    ||||||| ||||||||||||||||||||| |||| |  |||| ||| |||||| |||||||||||||||||||    
T  8198727 attgtaacaaattggtctttaagttttttccgtaccacttaggtcc-tttaagataattaattgtaataagtt 8198656  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 8203487 - 8203416
Alignment:
Q  147 attgtaataaattggtctttaagtttttt-cgtaactattagatccttttaagttaattaattgtaataagtt 218  Q
    ||||||| ||||||||||||||||||||| |||| |  |||| ||| |||||| |||||||||||||||||||    
T  8203487 attgtaacaaattggtctttaagttttttccgtaccacttaggtcc-tttaagataattaattgtaataagtt 8203416  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 4558697 - 4558738
Alignment:
Q  135 cttaagtaattta-ttgtaataaattggtctttaagtttttt 175  Q
    ||||||| ||||| ||||||||||||||||||||||||||||    
T  4558697 cttaagttatttaattgtaataaattggtctttaagtttttt 4558738  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 26706432 - 26706352
Alignment:
Q  150 gtaataaattggt-ctttaagttttttcgtaactattagatccttttaagttaattaattgtaataagtttgtcatttaag 229  Q
    ||||||||||| | ||||||||||||||||| |  |||  |||||||||||||||||||| | | ||||||||| ||||||    
T  26706432 gtaataaattgattctttaagttttttcgtatcatttaagtccttttaagttaattaattattacaagtttgtcctttaag 26706352  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 18128598 - 18128528
Alignment:
Q  149 tgtaataaattggtc--tttaagttttttcgtaacta-ttagatccttttaagttaattaattgtaataagtt 218  Q
    |||||||||||||||  ||||||||||||||| |||| |||| | | ||||||||||||||||||||||||||    
T  18128598 tgtaataaattggtccttttaagttttttcgt-actacttaggttc-tttaagttaattaattgtaataagtt 18128528  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 16419660 - 16419697
Alignment:
Q  193 tttaagttaattaattgtaataagtttgtcatttaagt 230  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  16419660 tttaagttaattaattgtaacaagttggtcatttaagt 16419697  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 33547811 - 33547848
Alignment:
Q  193 tttaagttaattaattgtaataagtttgtcatttaagt 230  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  33547811 tttaagttaattaattgtaacaagtttgtcttttaagt 33547848  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 13953557 - 13953520
Alignment:
Q  193 tttaagttaattaattgtaataagtttgtcatttaagt 230  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  13953557 tttaagttaattaattgtaacaagtttgtcttttaagt 13953520  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 230
Target Start/End: Complemental strand, 38458885 - 38458803
Alignment:
Q  147 attgtaataaattggtctttaagtttttt-cgtaactattagatccttttaagttaattaattgtaataagtttgtcatttaagt 230  Q
    ||||||||||||| || |||||||||||| |||| |  ||| ||| |||||||||| || ||||||||||||| |||||||||||    
T  38458885 attgtaataaattagt-tttaagtttttttcgtaccacttatatc-ttttaagttattttattgtaataagttagtcatttaagt 38458803  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 9357931 - 9357887
Alignment:
Q  186 agatccttttaagttaattaattgtaataagtttgtcatttaagt 230  Q
    |||||||||||||||| |||||| ||||||||| ||| |||||||    
T  9357931 agatccttttaagttatttaattataataagttggtcctttaagt 9357887  T

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