View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_low_30 (Length: 254)
Name: NF3270_low_30
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 10474463 - 10474367
Alignment:
| Q |
5 |
gaggagcagagatgagagtgttggaagatttgttgacgcatctgaaccgcataagagattttactgcgagaaaggatagtacttcaaccaccagttc |
101 |
Q |
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| T |
10474463 |
gaggatcagagatgagagtgttaaaaaatttgttgacgcatctgaaccgcataagagattttactgcgagaaaggatagtacttcagccaccagttc |
10474367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 10463521 - 10463425
Alignment:
| Q |
5 |
gaggagcagagatgagagtgttggaagatttgttgacgcatctgaaccgcataagagattttactgcgagaaaggatagtacttcaaccaccagttc |
101 |
Q |
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| T |
10463521 |
gaggatcagatatgagagtgttaaaaaatttgttgacgcacctgaatcgcataagaggttttactgcgagcagggatagtacttcagccaccagttc |
10463425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 254
Target Start/End: Complemental strand, 10463380 - 10463244
Alignment:
| Q |
122 |
ccatggagccgccttgcatgtggttaggtagaagaattaaccctagaaag----tgaa-ccaaaacgaagcaaccaggttgaatattgcgacgttttaat |
216 |
Q |
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| T |
10463380 |
ccatggtgccgccgtgcatgtggtcacctagaagaattaaccctagcaagcaactgaaaccaaaactaagcaaccaagttgaatcgtgcaac-ttttaat |
10463282 |
T |
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| Q |
217 |
atttgtttctttctgggctgttgtataatgggttgttt |
254 |
Q |
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| T |
10463281 |
atatgtttctttttgggcttttgtataatgggttgttt |
10463244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 8437955 - 8438005
Alignment:
| Q |
11 |
cagagatgagagtgttggaagatttgttgacgcatctgaaccgcataagag |
61 |
Q |
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| T |
8437955 |
cagagatgagagtgttgaaagatttgttgaggcacctgaaccggataagag |
8438005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 8444260 - 8444310
Alignment:
| Q |
11 |
cagagatgagagtgttggaagatttgttgacgcatctgaaccgcataagag |
61 |
Q |
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| T |
8444260 |
cagagatgagagtgttgaaagatttgttgaggcacctgaaccggataagag |
8444310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 10481421 - 10481371
Alignment:
| Q |
11 |
cagagatgagagtgttggaagatttgttgacgcatctgaaccgcataagag |
61 |
Q |
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| T |
10481421 |
cagagatgagagtgttgtaaaacttgttgacgcacctgaatcgcataagag |
10481371 |
T |
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