View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_low_37 (Length: 244)
Name: NF3270_low_37
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 3 - 228
Target Start/End: Original strand, 14650807 - 14651032
Alignment:
| Q |
3 |
ttccccaacttcgtctctttcagtaaattctctaaaacaataatattgttcttgttatcaatctttgttacaatccttccatttgagnnnnnnnnggaat |
102 |
Q |
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| T |
14650807 |
ttccccaactttgtctctttcagtaaattctctaaaacattaaaattgttcttgttatcaatctttgttacaatccttcaatttgagggttttttggaat |
14650906 |
T |
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| Q |
103 |
ctgagtaagaagaaagttgcattcgagttttcgttagaaagagaagatgaattttcgagttgtaagtgatccgaaatattttgacaagaattggaacatt |
202 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14650907 |
ctgagtaagaagaaagttgcgttcgagttttcgttagaaagagaggatgaattttcgagttgtaagtgatccgaaatattttgacaagaattggaacatt |
14651006 |
T |
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| Q |
203 |
ctacaacatgcaattcgtgagatatt |
228 |
Q |
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|||||||||||||||||||||||||| |
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| T |
14651007 |
ctacaacatgcaattcgtgagatatt |
14651032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 98 - 228
Target Start/End: Original strand, 14659341 - 14659471
Alignment:
| Q |
98 |
ggaatctgagtaagaagaaagttgcattcgagttttcgttagaaagagaagatgaattttcgagttgtaagtgatccgaaatattttgacaagaattgga |
197 |
Q |
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| T |
14659341 |
ggaatctgagtaagacgaaaattgtgttcgagttttcgttagaaagagaagatgaattttcaggttgcaagtgatccggaatattttgacaagaattgga |
14659440 |
T |
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| Q |
198 |
acattctacaacatgcaattcgtgagatatt |
228 |
Q |
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| T |
14659441 |
acattctacaacttgcaatttgtgagatatt |
14659471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 14625396 - 14625495
Alignment:
| Q |
129 |
gttttcgttagaaagagaagatgaattttcgagttgtaagtgatccgaaatattttgacaagaattggaacattctacaacatgcaattcgtgagatatt |
228 |
Q |
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||||||| |||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
14625396 |
gttttcgctagaaacagaagatgaattttcgagtcgcaagtgatccggaatattttgacaagaattggaacattttaaaacatgcaattcgtgagatatt |
14625495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 14659132 - 14659205
Alignment:
| Q |
1 |
cgttccccaacttcgtctctttcagtaaattctctaaaacaataatattgttcttgttatcaatctttgttacaa |
75 |
Q |
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| T |
14659132 |
cgttccccaacttcgtctctttcagtaaattctctcaaaaaataatattgtt-ttgttatcaatcattgttacaa |
14659205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 17692954 - 17692726
Alignment:
| Q |
1 |
cgttccccaacttcgtctctttcagtaaattctctaaaacaataatattgttcttgttatcaatctttgttacaatccttccatttgagnnnnnnnn-gg |
99 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
17692954 |
cgttcctcaacttcgtctctttcagtaaattctctaaaacaataatattgttcttgttatcaatctttgttacaatccttcaatttgaggttttttttgg |
17692855 |
T |
|
| Q |
100 |
aatctgagtaagaagaaagttgcattcgagttttcgttagaaagagaagatgaattttcgagttgtaagtgatccgaaatattttgacaagaattggaac |
199 |
Q |
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| T |
17692854 |
aatctgagtaagaagaaagttgcgttcgagtttttgttagaaagagaagatgaattttcgagttgtaagtgatcccaaatattttgacaagaattggaac |
17692755 |
T |
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| Q |
200 |
attctacaacatgcaattcgtgagatatt |
228 |
Q |
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| T |
17692754 |
attctacaacatgccattcgtgagatatt |
17692726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 98 - 228
Target Start/End: Complemental strand, 17685821 - 17685691
Alignment:
| Q |
98 |
ggaatctgagtaagaagaaagttgcattcgagttttcgttagaaagagaagatgaattttcgagttgtaagtgatccgaaatattttgacaagaattgga |
197 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||| |
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| T |
17685821 |
ggaatctgagtaagacgaaagttgtgttcgagttttcgttagaaagagaagatgaattttcaggttgcaagtgatccggaatattttgacaagaattgga |
17685722 |
T |
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| Q |
198 |
acattctacaacatgcaattcgtgagatatt |
228 |
Q |
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|||||||||||| ||||||| |||||||||| |
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| T |
17685721 |
acattctacaacttgcaatttgtgagatatt |
17685691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 17704143 - 17704044
Alignment:
| Q |
129 |
gttttcgttagaaagagaagatgaattttcgagttgtaagtgatccgaaatattttgacaagaattggaacattctacaacatgcaattcgtgagatatt |
228 |
Q |
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||||||| |||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17704143 |
gttttcgctagaaacagaagatgaattttcgagtcgcaagtgatccggaatattttgacaagaattggaacattctaaaacatgcaattcgtgagatatt |
17704044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 17686026 - 17685957
Alignment:
| Q |
1 |
cgttccccaacttcgtctctttcagtaaattctctaaaacaataatattgttcttgttatcaatctttgttacaa |
75 |
Q |
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||||||||||||| ||||||||||||||||| ||||||| || |||||| ||||||||||| ||||||||| |
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| T |
17686026 |
cgttccccaacttggtctctttcagtaaatt-tctaaaaaaaaaatatt----ttgttatcaattattgttacaa |
17685957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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