View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_low_43 (Length: 235)
Name: NF3270_low_43
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9232022 - 9232244
Alignment:
| Q |
1 |
ctcaaaaccgatccaggccactgtggaaacacaaggtatgaattagattgcaacgaaaacggtccatcattaactctgttctcggggaaatactatgtac |
100 |
Q |
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| T |
9232022 |
ctcaaaaccgatccaaatcactgcggagacacaaggtacgaattagattgcaacaaaaacggtccatcattaaccatgttctccgggaaatactatgtac |
9232121 |
T |
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| Q |
101 |
aacacattgattacaagagatttaaaatttcgttaagtgacgcgggtgcagtggaagacactaattgctcttttatcccacggtactttttatacgatcg |
200 |
Q |
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| T |
9232122 |
aacacattgattacaagggatttaaaattcgattaagtgacgcgggtgcagtggaagatgctaattgctcttttatcccacggtactttttatatgatca |
9232221 |
T |
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| Q |
201 |
aagttttaataatgttctttttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
9232222 |
aagttttaataatgttctttttg |
9232244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 9386623 - 9386430
Alignment:
| Q |
1 |
ctcaaaaccgatccaggccactgtggaaacacaaggtatgaattagattgcaacgaaaacggtccatcattaactctgttctcggggaaatactatgtac |
100 |
Q |
| |
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|||||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| |
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| T |
9386623 |
ctcaaaactgatccaaaccactgtggggacaaaaggtatgaattagattgcaacgaaaatggtccatcattaaccatgttctccgggaaatactatgtac |
9386524 |
T |
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| Q |
101 |
aacacattgattacaagagatttaaaatttcgttaagtgacgcgggtgcagtggaagacactaattgctcttttatcccacggtactttttata |
194 |
Q |
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||||||| ||||||||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |
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| T |
9386523 |
aacacatagattacaagaggtttataattcgattaagtgacgcgggtgcagtggaagatgctaattgctctttcatcccgcggtactttttata |
9386430 |
T |
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