View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_low_44 (Length: 235)
Name: NF3270_low_44
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 25907878 - 25907659
Alignment:
| Q |
1 |
tttgtgggtcagcaatcctggctagtggagaaagtgtgttgccttcatcgtcgaatgcaacccgactccccagtggtctatgcatgttaatcttgagcnn |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25907878 |
tttgtgggtcagcaatcctggctagtggaggaagtgtgttgccttcatcgtcgaatacaacccgactccccagtggtctatgcatgttaatcttgagctt |
25907779 |
T |
|
| Q |
101 |
nnnnnnctttaataaacgagttgctggcctgcacatgaaaaacctaaatcagcnnnnnnngaaagtagaaactcaatgctccacaccaaatgatttccaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
25907778 |
ttttttctttaataaacgagttgctggcctgcacatgaaaaacctaaatcagtaaaaaaataaagtagaaacacaatgctccacaccaaatgatttccaa |
25907679 |
T |
|
| Q |
201 |
caagaaatatcataaatcct |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
25907678 |
caagaaatatcataaatcct |
25907659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40423065 - 40423285
Alignment:
| Q |
1 |
tttgtgggtcagcaatcctggctagtggagaaagtgtgttgccttcatcgtcgaatgcaacccgactccccagtggtctatgcatgttaatcttgagcnn |
100 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
40423065 |
tttgtgggtcagcaatcctggctagtggaggaagtgtgttgccttcatcgtcgaatacaacccgactccccagtggtctatgcgtgttaatcttgagctt |
40423164 |
T |
|
| Q |
101 |
nnnnnnctttaataaacgagttgctggcctgcacatgaaaaacctaaatcagcnnnnnnngaaagtagaaactcaatgctccacaccaaatgatttccaa |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||| ||||||||||||||| |
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| T |
40423165 |
ttttttctttaataaacgagttgctggcctgcacgtgaaaaatctaaatcagtaaaaaaagaaagtagaaactcaaagctccacgccaaatgatttccaa |
40423264 |
T |
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| Q |
201 |
caagaaatatcataaatcctg |
221 |
Q |
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|||||||| |||||||||||| |
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| T |
40423265 |
caagaaatgtcataaatcctg |
40423285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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