View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3270_low_9 (Length: 492)
Name: NF3270_low_9
Description: NF3270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3270_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 20 - 415
Target Start/End: Complemental strand, 36573259 - 36572863
Alignment:
| Q |
20 |
acacgtaaaccagagtttcaccagcaaggaaagcccaaattcgtaggcacgaagaatgtccagctgatgagaatgaaatggaaccttattgttgaagagt |
119 |
Q |
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| T |
36573259 |
acacgtaaaccagagtttcaccagcaaggaaagcccaaattcgtaggcacgaagaatgtccagctgatgagaatgaaatggaaccttattgttgaagagt |
36573160 |
T |
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| Q |
120 |
ctccctgctttaatttcattttatatttagataattttactaaattacttttataagtgagttgagcatgtaaaattaagacaaaagtt-tatatatctt |
218 |
Q |
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| T |
36573159 |
ctccctgctttaatttcattttatatttagataattttactaaattacttttataagtgagttgagcatgtaaaattaagacaaaagttatatatatctt |
36573060 |
T |
|
| Q |
219 |
aatttaaattaatatcaaacttagagaaagatcaattttatttaaacttgtaaatttggaaccatatgttttagcccatttgcaattagtcattttacat |
318 |
Q |
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| T |
36573059 |
aatttaaattaatatcaaacttagagaaagatcaattttatttaaacttgtaaatttggaaccatatgttttagcccatttgcaattagtcattttacat |
36572960 |
T |
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| Q |
319 |
ttttactcaattctaacccaatcaacatctaagtagcatgccacatgtgtaattactgannnnnnnnagaaattaaaatgtcaagcgtgtatatatc |
415 |
Q |
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| T |
36572959 |
ttttactcaattctaacccaatcaacatctaagtagcatgccacatgtgtaattactgattttttttagaaattaaaatgtcaagcgtgtatatatc |
36572863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 3597436 - 3597492
Alignment:
| Q |
319 |
ttttactcaattctaacccaatcaacatctaagtagcatgccacatgtgtaattact |
375 |
Q |
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| T |
3597436 |
ttttagtcaattttgacctagtcaacttctaagtggcatgccacatgtgtaattact |
3597492 |
T |
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