View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3271_high_10 (Length: 395)
Name: NF3271_high_10
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3271_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 42554844 - 42555214
Alignment:
| Q |
18 |
atgtatcataataataataatttcttttagtctcattagcaaccagcttattaatatcattcgttgatctcatctcttatgcttgttcttggtttgtttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42554844 |
atgtatcataataataataatttcttttagtctcattagcaaccagcttattcatatcattcattgatctcatctcttatgcttgttcttgatttgtttt |
42554943 |
T |
|
| Q |
118 |
tccatatcagaaaagaaattaaaggtttgtttttatatctggtgaaaagaaatatctctcatactaggaccttcacgccactaatacaaatatctcctta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42554944 |
tccatatcagaaaagaaattaaaggtttgtttttatatctggtgaaaagaaatatctctcatactaggaccttcacgccactaatacaaatatctcctta |
42555043 |
T |
|
| Q |
218 |
aagtgaacttgaaaagcttcttgaatttggtagaggaaggtcaatctagattcagannnnnnncctaaataaatagtttcagaatctataattatatttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42555044 |
aagtgaacttgaaaagcttcttgaatttggtagaggaaggtcaatctagattcagatttttttcctaaataaatagtttcagaatctataattatatttt |
42555143 |
T |
|
| Q |
318 |
tattttctaatctatcttacattttttgcattatatggtgcaattattagcacggtataccatttcatctc |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42555144 |
tattttctaatctatcttacattttttgcattatatggtgcaattattagcacgaaataccatttcatctc |
42555214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University