View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3271_high_24 (Length: 252)
Name: NF3271_high_24
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3271_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 12238832 - 12239055
Alignment:
| Q |
13 |
gagaatctccaagagaacaaaaaagccataaaaggaaacacatttgtcacggttcattatgacggaagcaataatgaagtgagcaccacgaaacttgatt |
112 |
Q |
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| T |
12238832 |
gagaatcttcaagagaacaaaaaagccataaaaggaaacacatttgtcacggttcaatgtgacggaagcaataatgaagtgagcaccacgaaacttgatt |
12238931 |
T |
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| Q |
113 |
ctgaaggcggaagttatcctacatggaacgagaaggtagtgatcgacgtgccattacatgcaaggtttgttacaatagaggtgaagtacaaaactagagg |
212 |
Q |
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| T |
12238932 |
ctgaaggcggaagttatcctacatggaacgagaaggtagtgatcgacgtgccattacatgcaaggttcgttacaatagaggtgaagtacaaaactagagg |
12239031 |
T |
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| Q |
213 |
aagtagtagtaatagtgttggaat |
236 |
Q |
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|||||||||||||||||||||||| |
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| T |
12239032 |
aagtagtagtaatagtgttggaat |
12239055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 12229297 - 12229520
Alignment:
| Q |
13 |
gagaatctccaagagaacaaaaaagccataaaaggaaacacatttgtcacggttcattatgacggaagcaataatgaagtgagcaccacgaaacttgatt |
112 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12229297 |
gagaatctccaagaaaacaaaaaagccataaaaggaaacacatttgtcacggttcaatgtgacggaagcaataatgaagtgagcaccacgaaacttgatt |
12229396 |
T |
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| Q |
113 |
ctgaaggcggaagttatcctacatggaacgagaaggtagtgatcgacgtgccattacatgcaaggtttgttacaatagaggtgaagtacaaaactagagg |
212 |
Q |
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| T |
12229397 |
ctgaaggcggaagttatcctacatggaacgagaaggtagtgatcgacatgccattacatgcaaggttcgttacaatagaggtgaagtacaaaactagagg |
12229496 |
T |
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| Q |
213 |
aagtagtagtaatagtgttggaat |
236 |
Q |
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|||||||||||||||||||||||| |
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| T |
12229497 |
aagtagtagtaatagtgttggaat |
12229520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 12235347 - 12235567
Alignment:
| Q |
13 |
gagaatctccaagagaacaaaaaagccataaaaggaaacacatttgtcacggttcattatgacggaagcaataatgaagtgagcaccacgaaacttgatt |
112 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12235347 |
gagaatcttcaagagaacaaaaaagccataaaaggaaacacatttgtcatggttcaatgtgacggaagcaataatgaagtgagcaccacgaaacttgatt |
12235446 |
T |
|
| Q |
113 |
ctgaaggcggaagttatcctacatggaacgagaaggtagtgatcgacgtgccattacatgcaaggtttgttacaatagaggtgaagtacaaaactagagg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| |
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| T |
12235447 |
ctgaaggcggaagttatcctacatggaacgagaaggtagtgatcgacgtgccattacatgcaaggttcgtaacaatagaggtgaagtacaaaacaagagg |
12235546 |
T |
|
| Q |
213 |
aagtagtagtaatagtgttggaat |
236 |
Q |
| |
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| |||||||||||||||||||| |
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| T |
12235547 |
a---agtagtaatagtgttggaat |
12235567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 12245369 - 12245596
Alignment:
| Q |
9 |
agcagagaatctccaagagaacaaaaaagccataaaaggaaacacatttgtcacggttcattatgacggaagcaataatgaagtgagcaccacgaaactt |
108 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||| | |||||||||||| | ||||||||||||||||||||| |
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| T |
12245369 |
agcagagaatcttcaagagaacaaaaaagccataaaagggaacacattcgttacggttcaatgtgacggaagcaacagggaagtgagcaccacgaaactt |
12245468 |
T |
|
| Q |
109 |
gattctgaaggcggaagttatcctacatggaacgagaaggtagtgatcgacgtgccattacatgcaaggtttgttacaatagaggtgaagtacaaaacta |
208 |
Q |
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| T |
12245469 |
gattccgaaggaggaagttaccctacatggaacgagaagttggtaatggatgtgccattacatgcaaggttcctaacaatagaggtgaagtacaaaacaa |
12245568 |
T |
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| Q |
209 |
gaggaagtagtagtaatagtgttggaat |
236 |
Q |
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|||| |||||||| |||||||||||||| |
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| T |
12245569 |
gaggtagtagtagcaatagtgttggaat |
12245596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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