View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3271_high_27 (Length: 247)
Name: NF3271_high_27
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3271_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 52763575 - 52763805
Alignment:
| Q |
1 |
tttgcatgttgatattgaagaccattgacgatgacaactagatcctatagcaagttatacaattcaaagtgcctgtcaatttttcattaataaggggtc- |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52763575 |
tttgcatgttgatattgaagaccattgacgatgacaactagatcctatagcaagttatacaattcaaagtgcctgtcaatttttcattaataaggggtca |
52763674 |
T |
|
| Q |
100 |
caatctccttcgttattagcgtatttaatttgacatgagaaagttcctttgaatgtttgtgtttttatttcgtgtattcttcacaatcggattcctaacc |
199 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52763675 |
caatctccttccttattagcgtatttaatttgacatgagaaagttcctttgaatgtttgtgtttttatttcgtgtattcttcacaatcggattcctaacc |
52763774 |
T |
|
| Q |
200 |
aaggataatcttttcatacgaggcatcattt |
230 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
52763775 |
aaggataatcttttcatacgaggcatcattt |
52763805 |
T |
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