View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3271_high_28 (Length: 247)
Name: NF3271_high_28
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3271_high_28 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 117 - 247
Target Start/End: Complemental strand, 25515747 - 25515617
Alignment:
| Q |
117 |
acaaagagtgtgatggagagaaaaattccgatctttcatcttgtaagctctaataatcaccaacatattggcataatggtgaaagcgatgagtgctcaat |
216 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25515747 |
acaaagagtgtgatggagagaaaaattccaatctttcatcttgtaagctctaataatcaccaacatattggcataatggtgaaagtgatgagtgctcaat |
25515648 |
T |
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| Q |
217 |
gatactaactgctccacatgaagagactcat |
247 |
Q |
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|||| ||||||||||||||||||||| |||| |
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| T |
25515647 |
gatattaactgctccacatgaagagaatcat |
25515617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 247
Target Start/End: Complemental strand, 26064081 - 26063910
Alignment:
| Q |
78 |
ctcccaatttttctagaatatctgca-aaccattgccctcacaaagagtgtgatggagagaaaaattccgatctttcatcttgtaagctctaataa-tca |
175 |
Q |
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|||||||||| ||||||||||||| || |||||||||| || ||| ||||||||||||||||||| ||||||| || |||||||||| |||| || |
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| T |
26064081 |
ctcccaatttcgctagaatatctgctcaagcattgccctcgggaaaagtctgatggagagaaaaattccaatctttcttcatgtaagctctgataaatct |
26063982 |
T |
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| Q |
176 |
ccaacatattggcataatggtgaaagcgatgagtgctcaatgatactaactgctccacatgaagagactcat |
247 |
Q |
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|||||||||||||||||||||||||| |||||||| ||| ||| |||||||| |||| |||||||| |||| |
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| T |
26063981 |
ccaacatattggcataatggtgaaagtgatgagtgttcattgaacctaactgcaccacgtgaagagaatcat |
26063910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 247
Target Start/End: Complemental strand, 26084050 - 26083879
Alignment:
| Q |
78 |
ctcccaatttttctagaatatctgca-aaccattgccctcacaaagagtgtgatggagagaaaaattccgatctttcatcttgtaagctctaataa-tca |
175 |
Q |
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|||||||||| ||||||||||||| || |||||||||| || ||| ||||||||||||||||||| ||||||| || |||||||||| |||| || |
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| T |
26084050 |
ctcccaatttcgctagaatatctgctcaagcattgccctcgggaaaagtctgatggagagaaaaattccaatctttcttcatgtaagctctgataaatct |
26083951 |
T |
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| Q |
176 |
ccaacatattggcataatggtgaaagcgatgagtgctcaatgatactaactgctccacatgaagagactcat |
247 |
Q |
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| T |
26083950 |
ccaacatattggcataatggtgaaagtgatgagtgttcattgaacctaactgcaccacgtgaagagaatcat |
26083879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 25455181 - 25455073
Alignment:
| Q |
120 |
aagagtgtgatggagagaaaaattccgatctttcatcttgtaagctctaataatcaccaacata-ttggcataatggtgaaagcgatgagtgctcaatga |
218 |
Q |
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|||||| ||||||||||||||||| | ||||||| || |||||||||| |||||| |||||||| |||||||||||||||||| ||||| ||| || ||| |
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| T |
25455181 |
aagagtctgatggagagaaaaatttcaatctttcttcatgtaagctctgataatctccaacatatttggcataatggtgaaagagatgaatgcccattga |
25455082 |
T |
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| Q |
219 |
tactaactg |
227 |
Q |
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||||||||| |
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| T |
25455081 |
tactaactg |
25455073 |
T |
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