View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3271_high_37 (Length: 231)
Name: NF3271_high_37
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3271_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 9380852 - 9381049
Alignment:
| Q |
16 |
atgaatgcaaaaagttaccgtggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtc |
115 |
Q |
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| T |
9380852 |
atgaatgcaaaaagttaccatggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtc |
9380951 |
T |
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| Q |
116 |
aaaagccttagaattcttaaaagatgttccatacttggcaattgttcctgctgttagtctactatgtagcattatcactgaattcatcacttccaatg |
213 |
Q |
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| T |
9380952 |
aaaagccttagaattcttaaaagatgttccatacttagcaattgttcctgctgttagtctactatgtagcattatcactgaattcatcacttccaatg |
9381049 |
T |
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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 55738865 - 55739062
Alignment:
| Q |
16 |
atgaatgcaaaaagttaccgtggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtc |
115 |
Q |
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|||||||||| || |||| ||||||||||||||| | || |||||||| ||||| ||||| |||||||| ||||||||||||||||| ||||| | || |
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| T |
55738865 |
atgaatgcaagaaactaccttggaacctaattttgttacttggagctggttttgctttagctgatggagttcaatctagtggtctagcagatgtgctttc |
55738964 |
T |
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| Q |
116 |
aaaagccttagaattcttaaaagatgttccatacttggcaattgttcctgctgttagtctactatgtagcattatcactgaattcatcacttccaatg |
213 |
Q |
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||||| ||||| |||||| |||||| ||||| |||||||||| |||||| |||||||| || |||| ||||| ||||||||||||||||| |||| |
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| T |
55738965 |
taaagctttagatttcttagaagatgccccatatttggcaattgctcctgcagttagtcttataagtagtattattactgaattcatcacttctaatg |
55739062 |
T |
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