View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3271_high_6 (Length: 425)
Name: NF3271_high_6
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3271_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 151 - 409
Target Start/End: Complemental strand, 34273728 - 34273473
Alignment:
| Q |
151 |
attttattattataattgtaatttgattttaaaacccaggttagttataattttttgtgtcaaatgttgaacttagagcaacattagtatagattgcatc |
250 |
Q |
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| T |
34273728 |
attttattattataattgtaatttgattttaaaacccaggtttgttataattttttgtgtcat-tgttgaacttagagcaacattagtatagattgcatc |
34273630 |
T |
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| Q |
251 |
acatctattcataaaaagctatgataaccttgtgtaatattggtcttgttggtgaatgtgaatatctattttaatttctatgttatatttatgttcattt |
350 |
Q |
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|||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34273629 |
gcatctattcataaaaagctatgataaccttgtgt--ttatgttcttgttggtgaatgtgaatatctattttaatttctatgttatatttatgttcattt |
34273532 |
T |
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| Q |
351 |
cctaatacctatattagattctgaaatctaacatctgattaatttcaagattgtcgatc |
409 |
Q |
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| T |
34273531 |
cctaatacctatattagattctgaaatctaacatgtgattaatttcaagattgtcgatc |
34273473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 34273949 - 34273851
Alignment:
| Q |
5 |
gagtgatatgaagaaaaaataaagtgttaaatgagtgaatgagaattagatatgcgggttaattagtgcatcttgcgctcctcgtcattaataatattt |
103 |
Q |
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| T |
34273949 |
gagtgagataaagaaaaaataaagtgttaaatgagtgaatgagaattagatatgcgggttaattagtgcatcttgcgctcctcgtcattaataatattt |
34273851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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