View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3271_low_12 (Length: 386)
Name: NF3271_low_12
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3271_low_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 1863462 - 1863685
Alignment:
| Q |
13 |
aatatttcgaatcagtagctaggttcgaggagcacatgacttttcatagttgggttaatattaagacttgataagttatcaaaggtttaccaatagtgtt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1863462 |
aatatttcgaatcagtagctaggttcgaggagcacatgacttttcatagttgggttaatattaagacttgataagttatcaaaggtttaccaatagtgtt |
1863561 |
T |
|
| Q |
113 |
gcgtaattgtgttccttcttttccctcatttccctttcctgaaatctcttacttattctatattctgtttggttcaccctacatgtatgagaaattgcta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1863562 |
gcgtaattgtgttccttcttttccctcatttccctttcctgaaatctcttacttattctatattctgtttggttcaccctacatgtatgagaaattgcta |
1863661 |
T |
|
| Q |
213 |
acaacaaatttatatgcctcatta |
236 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1863662 |
acaacaaatttatatgcctcatta |
1863685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 235 - 369
Target Start/End: Original strand, 1864476 - 1864610
Alignment:
| Q |
235 |
taaatgtaacatgttttatttaattttcaattcttgtttatttaatcttacattttccatcactgtctttataattgctatggtttaatatttggactat |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1864476 |
taaatgtaacatgttttatttaattttcaattcttgtttatttaatcttacattttccatcactgcctttataattgctatggtttaatatttggactat |
1864575 |
T |
|
| Q |
335 |
catttttaagaggttgataaataaacacacacaca |
369 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1864576 |
catttttaagaggttgataaataaaaacacacaca |
1864610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 51576285 - 51576228
Alignment:
| Q |
231 |
tcattaaatgtaacatgttttatttaattttcaattcttgtttatttaatcttacatt |
288 |
Q |
| |
|
||||||| ||| |||||||||| ||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
51576285 |
tcattaattgttacatgttttaattaattttcaattcttgtttacttaatctcacatt |
51576228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University