View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3271_low_13 (Length: 365)
Name: NF3271_low_13
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3271_low_13 |
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| [»] scaffold0199 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 106 - 351
Target Start/End: Complemental strand, 1889756 - 1889511
Alignment:
| Q |
106 |
aaggaaaatacgtaatttttgaataagcatctcgcgagtaccaaaaagtggtttcttgcttgtgatccagtccttctccagaagacttgatttagtatca |
205 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1889756 |
aaggaaaagacgtaatttttgaataagcatctcgcgagtaccaaaaagtggtttcttgcttgggatccagtccttctccagaagacttgatttagtatca |
1889657 |
T |
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| Q |
206 |
gacaacatctcatcatggaatgcagatactatttggtagattgatgtcttgagaacatcagcaatagcataagcttttgaattcactggcccattttctc |
305 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1889656 |
gacaacatctcatcatggaatgcagatactatttgatagattgatgtcttgagaacatcagcaatagcataagcttttgaattcactggcccattttctc |
1889557 |
T |
|
| Q |
306 |
ttttaacagcagatcccaactgatttggtgattgcaggtttgtttt |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1889556 |
ttttaacagcagatcccaactgatttggtgattgcaggtttgtttt |
1889511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 106 - 351
Target Start/End: Original strand, 1666478 - 1666723
Alignment:
| Q |
106 |
aaggaaaatacgtaatttttgaataagcatctcgcgagtaccaaaaagtggtttcttgcttgtgatccagtccttctccagaagacttgatttagtatca |
205 |
Q |
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|||||||| | |||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||||||||||||||| || || ||||||| |||| |
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| T |
1666478 |
aaggaaaagatgtaatttttgaataagcatcaagcgagtaccaaaaagtggtatattgcttgagatccagtccttctccaaaaaacatgatttaaaatca |
1666577 |
T |
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| Q |
206 |
gacaacatctcatcatggaatgcagatactatttggtagattgatgtcttgagaacatcagcaatagcataagcttttgaattcactggcccattttctc |
305 |
Q |
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| T |
1666578 |
gacaacatctcatcatggaatacagatactatttggtagattgatgtcttgagaacatcagcaatagcataagcttttgaattcactggcccattttctc |
1666677 |
T |
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| Q |
306 |
ttttaacagcagatcccaactgatttggtgattgcaggtttgtttt |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1666678 |
ttttaacagcagatcccaactgatttggtgattgcaggtttgtttt |
1666723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 106 - 351
Target Start/End: Complemental strand, 1892832 - 1892587
Alignment:
| Q |
106 |
aaggaaaatacgtaatttttgaataagcatctcgcgagtaccaaaaagtggtttcttgcttgtgatccagtccttctccagaagacttgatttagtatca |
205 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| || |
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| T |
1892832 |
aaggaaaagacgtaatttttgaataagcatctcgcgagtaccgtaaagtggtttactgcttgtgatccagtccttctccagaggacttgatttagtacca |
1892733 |
T |
|
| Q |
206 |
gacaacatctcatcatggaatgcagatactatttggtagattgatgtcttgagaacatcagcaatagcataagcttttgaattcactggcccattttctc |
305 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| || |
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| T |
1892732 |
gacaacatctgatcatgaaatgcagatactatttggtagattgatgtcttgagaacatcagcaatagcataagcttctgaattcacatgctcattttttc |
1892633 |
T |
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| Q |
306 |
ttttaacagcagatcccaactgatttggtgattgcaggtttgtttt |
351 |
Q |
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| ||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
1892632 |
tcttaacagcaaatgccaactgatttggtgattgcaggtttgtttt |
1892587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 1666425 - 1666332
Alignment:
| Q |
21 |
actggactaaacaacatgcttgca-gaggctatacaaattggatgtattcaagtagagttgataattatatagttggtagggatagaaggaaaa |
113 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1666425 |
actggactaaacaacatgcttgtaagaggctatacaaattggatgtattcaagtagagttgataattatatagttggtagggatagaaggaaaa |
1666332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 1889809 - 1889902
Alignment:
| Q |
21 |
actggactaaacaacatgcttgca-gaggctatacaaattggatgtattcaagtagagttgataattatatagttggtagggatagaaggaaaa |
113 |
Q |
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|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1889809 |
actggactaaacaacatgcttgtaagaggctatacaaattggatgtattcaagtagagttgataattatatagttggtagggatagaaggaaaa |
1889902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 1892883 - 1892976
Alignment:
| Q |
21 |
actggactaaacaacatgcttgca-gaggctatacaaattggatgtattcaagtagagttgataattatatagttggtagggatagaaggaaaa |
113 |
Q |
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|||||||||||||||||||||| | ||||||||||||||| ||||| ||||||| ||||||||||||||||| ||| |||||| || |||||| |
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| T |
1892883 |
actggactaaacaacatgcttgtaagaggctatacaaatttgatgttgtcaagtatagttgataattatatagatggaagggatggagggaaaa |
1892976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 1664024 - 1664061
Alignment:
| Q |
314 |
gcagatcccaactgatttggtgattgcaggtttgtttt |
351 |
Q |
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||||||||||||||||||||| |||||||||||||||| |
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| T |
1664024 |
gcagatcccaactgatttggtaattgcaggtttgtttt |
1664061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 1663929 - 1663969
Alignment:
| Q |
273 |
cataagcttttgaattcactggcccattttctcttttaaca |
313 |
Q |
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||||||||||||||||||||| || ||||| |||||||||| |
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| T |
1663929 |
cataagcttttgaattcactgccctattttttcttttaaca |
1663969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 106 - 314
Target Start/End: Complemental strand, 5999384 - 5999176
Alignment:
| Q |
106 |
aaggaaaatacgtaatttttgaataagcatctcgcgagtaccaaaaagtggtttcttgcttgtgatccagtccttctccagaagacttgatttagtatca |
205 |
Q |
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|||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
5999384 |
aaggaaaagacgtaatttttgtataagcatctcacgagtaccgaaaagtggtttctcgcttgtgatccagtccttctccagaagacttgatttagtacca |
5999285 |
T |
|
| Q |
206 |
gacaacatctcatcatggaatgcagatactatttggtagattgatgtcttgagaacatcagcaatagcataagcttttgaattcactggcccattttctc |
305 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||| |||| || |
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| T |
5999284 |
gacaacatctcatcatggaatgcagatactatttggtagatcgatgtcttgagaacgtcggcaatagcataagcttttgaatttactggcccgttttttc |
5999185 |
T |
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| Q |
306 |
ttttaacag |
314 |
Q |
| |
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||||||||| |
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| T |
5999184 |
ttttaacag |
5999176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 351
Target Start/End: Complemental strand, 5999124 - 5999082
Alignment:
| Q |
312 |
cagcagatcccaac---tgatttggtgattgcaggtttgtttt |
351 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||| |
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| T |
5999124 |
cagcagatcccaacagctgatttggtgattgcaggtttgtttt |
5999082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 6465 - 6502
Alignment:
| Q |
314 |
gcagatcccaactgatttggtgattgcaggtttgtttt |
351 |
Q |
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||||||||||||||||||||| |||||||||||||||| |
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| T |
6465 |
gcagatcccaactgatttggtaattgcaggtttgtttt |
6502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 6370 - 6410
Alignment:
| Q |
273 |
cataagcttttgaattcactggcccattttctcttttaaca |
313 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||||||| |
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|
| T |
6370 |
cataagcttttgaattcactgccctattttttcttttaaca |
6410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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