View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3271_low_15 (Length: 343)
Name: NF3271_low_15
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3271_low_15 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 5645711 - 5645387
Alignment:
| Q |
13 |
aatatactcaagaattgttccctcnnnnnnntatactcaagaattgaatggctttatacatatcattaaaagtacaacaatatcgagttgttagatatag |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
5645711 |
aatatactcaagaattgttccctcaaaaaaatatactcaagaattgaatagctttatacatatcactaaaagtacaacaatatcgacttgttagatatag |
5645612 |
T |
|
| Q |
113 |
gctagaggaatggctgcccaactcttggcaatccttatcttagtcggataggaaggaacaggagtcatgatgtcattgctatgctttatttatacgtaag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| || | |||| ||||||||||| |
|
|
| T |
5645611 |
actagaggaatggctgcccaactcttggcaatccttatcttagtcggataggaagaaacaagagtcatgatgttatggacatgc----cttatacgtaag |
5645516 |
T |
|
| Q |
213 |
ttctatagtatatagcataaatgtttacatattcttaaattatgaat-nnnnnnntgtttactccaatgtgtgtagtaagagaaaaccctaaacatcnnn |
311 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||| |||||||||||||||||||| |
|
|
| T |
5645515 |
ttcaatagtttatagcataaatgtttacatattcttaaattttgaataaaaaaaatgtttattccaa--tgtgtaggaagagaaaaccctaaacatc-tt |
5645419 |
T |
|
| Q |
312 |
nnnnnnagagcaaaggcagaatcactgcattt |
343 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
5645418 |
ttttttagagcaaaggcagaatcactgcattt |
5645387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University