View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3271_low_16 (Length: 340)
Name: NF3271_low_16
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3271_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 323
Target Start/End: Complemental strand, 8692820 - 8692516
Alignment:
| Q |
16 |
atatggctgcttcaagacacttttatgtttaaataatttcatcatgatgatcaaatacacacagataaaaatcacatggccttacaatgatgcaacttac |
115 |
Q |
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| T |
8692820 |
atatggctgcttcaagacacttttatgtttaaataatttcatcatgatgatcaaatacacacagatgaaaatcacatggccttacaatgatgcaacttac |
8692721 |
T |
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| Q |
116 |
aatgaaagaaacttcatcttgatagaattgttctaatttcatctaacaaaataaaatttatttacctttaatgttcacattgtgacaatcaaagatttga |
215 |
Q |
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| T |
8692720 |
aatgaaagaaacttcatcttgatagaattgttctaatttcatctaacaaaataaaatttatttacctttaatgttcacattgtgacaatcaaagatt--- |
8692624 |
T |
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| Q |
216 |
tgaatgccatcacatttgtctttacagaaaactaaagtgatgagatggaaggacaaattccttctcagtctgtacaatgcatcacattaagcatataatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8692623 |
tgaatgccatcacatttgtctttacagaaaactaaagtgatgagatggaaggacaaattccttctcagtctgtacaatgcatcacattaagcatgtaatg |
8692524 |
T |
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| Q |
316 |
accatttt |
323 |
Q |
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|||||||| |
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| T |
8692523 |
accatttt |
8692516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 224 - 314
Target Start/End: Original strand, 14383187 - 14383277
Alignment:
| Q |
224 |
atcacatttgtctttacagaaaactaaagtgatgagatggaaggacaaattccttctcagtctgtacaatgcatcacattaagcatataat |
314 |
Q |
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| T |
14383187 |
atcacatttgtctttacagaaaactaatgtggtgagatggaaggacaaattccttctcagtctgcagattgcatcacattaagcatgtaat |
14383277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 50 - 199
Target Start/End: Complemental strand, 8707778 - 8707631
Alignment:
| Q |
50 |
aatttcatcatgatgatcaaatacacacagataaaaatcacatggccttacaatgatgcaacttacaatgaaagaaacttcatcttgatagaattgttct |
149 |
Q |
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||||||||||||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||| ||| |||| |
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| T |
8707778 |
aatttcatcatgatgatgagatacact-agatagaaatcacatggccttacaatgatgcaacttacagtgaaacaaagttcgtcttgaaagagacattct |
8707680 |
T |
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| Q |
150 |
aatttcatctaacaaaataaaatttatttacctttaatgttcacattgtg |
199 |
Q |
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| T |
8707679 |
aaattcatcaaacaaaat-aaatttatttaccttcaatattcacattgtg |
8707631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 8699359 - 8699309
Alignment:
| Q |
224 |
atcacatttgtctttacagaaaactaaagtgatgagatggaaggacaaatt |
274 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8699359 |
atcacaattgtctttacagaaaactaaagtggtgagatggaaggacaaatt |
8699309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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