View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3271_low_17 (Length: 320)
Name: NF3271_low_17
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3271_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 19296299 - 19296144
Alignment:
| Q |
11 |
cagagacacactaaagagatcataaatgtagattaaaataataagttacatggacatggagatttagtcgccatctccgaatcatgagtactcgtaaaat |
110 |
Q |
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| T |
19296299 |
cagaaacacactaaagagatcataaatgtagattaaaataataagttacatggacatggagatttaatcgccatctctgaagcatgagtactcgtaaaat |
19296200 |
T |
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| Q |
111 |
ggtgaa--acccgtacaagatacatatacaatactcatggtactttattgttgctc |
164 |
Q |
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| T |
19296199 |
ggcgaagtacccgtacaagatacatatacaatactcatggtactttatttttgctc |
19296144 |
T |
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Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 154 - 302
Target Start/End: Complemental strand, 19296094 - 19295953
Alignment:
| Q |
154 |
tattgttgctcttccttctgtattcattcacttgcaagagagatatggctatcaatctatcaatggtagtggtaagggaaaacttccggtcaaat-tgaa |
252 |
Q |
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| T |
19296094 |
tattgttactcttccttctgtattcattcacttgcaagagagatatggctatcaat--------ggtagtggtaagggaaaacttccagtaaaatataaa |
19296003 |
T |
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| Q |
253 |
aaagctgatgaggaggtaagtctccctagattatccccttgtctcttctt |
302 |
Q |
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| T |
19296002 |
aaagctgatgaggaggtaagtctcgctagattatccccctgtctcttctt |
19295953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 21979266 - 21979168
Alignment:
| Q |
11 |
cagagacacactaaagagatcataaatgtagattaaaataataagttacatggacatggagatttagtcgccatctccgaatcatgagtactcgtaaaa |
109 |
Q |
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| T |
21979266 |
cagaaacacactaaagagatcatagatgtaagtgaaaataataagttatatggacatagagatttagtagccatctctgaagtatgagtactcgtaaaa |
21979168 |
T |
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