View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3271_low_19 (Length: 291)
Name: NF3271_low_19
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3271_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 11611897 - 11612061
Alignment:
| Q |
1 |
atcatcattattcaaactaaacaaggaccctcatccctagatnnnnnnnnn-ttatgcaatcttgataatgacttatgcaactgacacacacacatatta |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11611897 |
atcatcattattcaaactaaacaaggaccctcatccctagataaaaaaaaaattatgcaatcttgataatgacttatgcaactgacacacacacatatta |
11611996 |
T |
|
| Q |
100 |
agaaagagnnnnnnncagacactcacaacaaacatagcatagcaaaacactattcaacattcatg |
164 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11611997 |
agaaagagaaaaaaacagacactcacaacaaacatagcatagcaaaacactattcaacattcatg |
11612061 |
T |
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