View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3271_low_2 (Length: 592)

Name: NF3271_low_2
Description: NF3271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3271_low_2
NF3271_low_2
[»] chr7 (2 HSPs)
chr7 (13-449)||(23021460-23021896)
chr7 (495-566)||(32749604-32749675)
[»] chr1 (4 HSPs)
chr1 (438-575)||(45455187-45455324)
chr1 (447-566)||(33167875-33167994)
chr1 (456-575)||(37823256-37823375)
chr1 (447-566)||(29524561-29524680)
[»] chr4 (1 HSPs)
chr4 (447-566)||(18468652-18468771)
[»] chr2 (4 HSPs)
chr2 (447-570)||(39490784-39490907)
chr2 (457-570)||(36208777-36208890)
chr2 (447-567)||(17928491-17928612)
chr2 (447-567)||(1308034-1308158)
[»] chr8 (5 HSPs)
chr8 (447-561)||(13783481-13783595)
chr8 (457-574)||(29732336-29732453)
chr8 (457-567)||(43523573-43523684)
chr8 (447-566)||(38204624-38204743)
chr8 (447-567)||(44150544-44150665)
[»] chr6 (1 HSPs)
chr6 (447-567)||(24349141-24349262)
[»] chr3 (2 HSPs)
chr3 (447-572)||(49026711-49026837)
chr3 (447-567)||(11908583-11908704)
[»] chr5 (2 HSPs)
chr5 (447-567)||(39009167-39009287)
chr5 (466-567)||(23090084-23090186)


Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 449
Target Start/End: Original strand, 23021460 - 23021896
Alignment:
Q  13 aatatccacttgatcaccatacatttattaaagttcagtctgatattgaataataatgtcatgtttgtctgtttcacctaatgcactagtaactttattt 112  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23021460 aatatccactggatcaccatacatttattaaagttcagtctgatattgaataataatgtcatgtttgtctgtttcacctaatgcactagtaactttattt 23021559  T
Q  113 gatgcttttgaaaggttatgagagtcgtacaacacacatgtgttatcttatgacacattgaaataatgcaaacatggatcattaaatttggagggaaatg 212  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23021560 gatgcttttgaaaggttctgagagtcgtacaacacacatgtgttatcttatgacacattgaaataatgcaaacatggatcattaaatttggagggaaatg 23021659  T
Q  213 aaggataacnnnnnnngagagaaaatgaaaatgaaggataactatcactatttacatgttgcgtcaggaagattaaaacatcaccaagtggcaagtacca 312  Q
    |||||||||       |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||    
T  23021660 aaggataacttttattgagagaaaatgaaaatgaaggataacaatcactatttacatgttgcg-caggaagattaaaacatcaccaagaggcaaggacca 23021758  T
Q  313 actactac-acaaaattggaaaaattacgttgtacttgtctactagtgatatcaaatggaaac---attaataaacggaaaaatatcagttggaaatggt 408  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  23021759 actactacaacaaaattggaaaaattacgttgtacttgtctactagtgatatcaaatggaaacattattaataaacggaaaaatatcagttggaaatggt 23021858  T
Q  409 ttgcagttaaagctctggaccaccaccaataatgcatcaga 449  Q
    ||||||||||||||||||   ||||||||||||||||||||    
T  23021859 ttgcagttaaagctctgg---accaccaataatgcatcaga 23021896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 495 - 566
Target Start/End: Complemental strand, 32749675 - 32749604
Alignment:
Q  495 cattggagaagggttattgaagatgatgtggatgaaagagatgataaaccaattcaacaagttgaaagtctg 566  Q
    ||||||||||| | ||||||| |||| |||||||||||||||||| ||| | ||||||| ||||||| ||||    
T  32749675 cattggagaagaggtattgaaaatgaggtggatgaaagagatgatgaactatttcaacatgttgaaattctg 32749604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 438 - 575
Target Start/End: Original strand, 45455187 - 45455324
Alignment:
Q  438 taatgcatcagaccacctccaatggagttattgaaagccattttcaacttattgaatcattggagaagggttattgaagatgatgtggatgaaagagatg 537  Q
    |||||| | |||||||| ||||||| ||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45455187 taatgcgttagaccacccccaatggggttattgaaagtcattttcaatttattgaaccattggagaagggttattgaagatgatgtggatgaaagagatg 45455286  T
Q  538 ataaaccaattcaacaagttgaaagtctgccaccgtat 575  Q
    || |||||||||||||||||||||||||||||| ||||    
T  45455287 atgaaccaattcaacaagttgaaagtctgccacggtat 45455324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 447 - 566
Target Start/End: Complemental strand, 33167994 - 33167875
Alignment:
Q  447 agaccacctccaatggagttattgaaagccattttcaacttattgaatcattggagaagggttattgaagatgatgtggatgaaagagatgataaaccaa 546  Q
    |||||||| ||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33167994 agaccacccccaatggggttattgaaagccattttcaacctattgaaccattggagaagggttattgaagatgatgtggatgaaagagatgatgaaccaa 33167895  T
Q  547 ttcaacaagttgaaagtctg 566  Q
    ||||||| ||||||| ||||    
T  33167894 ttcaacatgttgaaaatctg 33167875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 456 - 575
Target Start/End: Complemental strand, 37823375 - 37823256
Alignment:
Q  456 ccaatggagttattgaaagccattttcaacttattgaatcattggagaagggttattgaagatgatgtggatgaaagagatgataaaccaattcaacaag 555  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||    
T  37823375 ccaatggggttattgaaagtcattttcaacttattgaaccattggagaagggttattgaacatgatgtggatgaaagagatgatgaaccaattcaataag 37823276  T
Q  556 ttgaaagtctgccaccgtat 575  Q
    |||||||| |||||| ||||    
T  37823275 ttgaaagtttgccacggtat 37823256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 447 - 566
Target Start/End: Complemental strand, 29524680 - 29524561
Alignment:
Q  447 agaccacctccaatggagttattgaaagccattttcaacttattgaatcattggagaagggttattgaagatgatgtggatgaaagagatgataaaccaa 546  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||  |    
T  29524680 agaccacctccaatggggttattgaaagtcattttcaacctattgaaccattggagaaggcttattgaagatgatgtggatgaaagagatgatgaacata 29524581  T
Q  547 ttcaacaagttgaaagtctg 566  Q
    ||||||| ||||||| ||||    
T  29524580 ttcaacatgttgaaaatctg 29524561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 447 - 566
Target Start/End: Original strand, 18468652 - 18468771
Alignment:
Q  447 agaccacctccaatggagttattgaaagccattttcaacttattgaatcattggagaagggttattgaagatgatgtggatgaaagagatgataaaccaa 546  Q
    ||||||||  |||||| |||||||||||||||||||||||  || || ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18468652 agaccacccacaatggggttattgaaagccattttcaactatttaaaccattggagaagggttattgaagatgatgtggatgaaagagatgatgaaccaa 18468751  T
Q  547 ttcaacaagttgaaagtctg 566  Q
    ||||||||||||||||||||    
T  18468752 ttcaacaagttgaaagtctg 18468771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 447 - 570
Target Start/End: Complemental strand, 39490907 - 39490784
Alignment:
Q  447 agaccacctccaatggagttattgaaagccattttcaacttattgaatcattggagaagggttattgaagatgatgtggatgaaagagatgataaaccaa 546  Q
    ||||||||  |||||| |||||||||||||||||||||||  || || |||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  39490907 agaccacccacaatggggttattgaaagccattttcaactatttaaaccattagagaagggttattgaagatgatgtggatgaaagagatgatgaaccaa 39490808  T
Q  547 ttcaacaagttgaaagtctgccac 570  Q
    ||||||||||||||||| ||||||    
T  39490807 ttcaacaagttgaaagtttgccac 39490784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 457 - 570
Target Start/End: Original strand, 36208777 - 36208890
Alignment:
Q  457 caatggagttattgaaagccattttcaacttattgaatcattggagaagggttattgaagatgatgtggatgaaagagatgataaaccaattcaacaagt 556  Q
    |||||| |||||| ||||| ||||| ||||  || || ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36208777 caatggggttattaaaagctatttttaactatttaaaccattgaagaagggttattgaagatgatgtggatgaaagagatgatgaaccaattcaacaagt 36208876  T
Q  557 tgaaagtctgccac 570  Q
    | ||||||| ||||    
T  36208877 taaaagtctaccac 36208890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 447 - 567
Target Start/End: Original strand, 17928491 - 17928612
Alignment:
Q  447 agaccacctccaatggagttattgaaagccattttcaacttattgaatc-attggagaaggg-ttattgaagatgatgtggatgaaagagatgataaacc 544  Q
    ||||||||  |||||| |||||||||||||||||||| || |||||| | |||||||||||| || ||||| ||||||||||||||||||||||| ||||    
T  17928491 agaccacccacaatggggttattgaaagccattttcatct-attgaaactattggagaaggggttgttgaaaatgatgtggatgaaagagatgatgaacc 17928589  T
Q  545 aattcaacaagttgaaagtctgc 567  Q
    | ||||||| |||||||||||||    
T  17928590 atttcaacatgttgaaagtctgc 17928612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 447 - 567
Target Start/End: Original strand, 1308034 - 1308158
Alignment:
Q  447 agaccacctccaatggagttattgaaagccattttcaacttattgaatc-attggagaaggg----ttattgaagatgatgtggatgaaagagatgataa 541  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||||| | ||||||||||||    ||| |||| |||||||| |||||||||||||| |    
T  1308034 agaccacccccaattgagttattgaaagccattttcaact-attgaaaccattggagaagggggggttactgaaaatgatgtgaatgaaagagatgatga 1308132  T
Q  542 accaattcaacaagttgaaagtctgc 567  Q
    |||| ||||||| ||||||| |||||    
T  1308133 accatttcaacatgttgaaaatctgc 1308158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 447 - 561
Target Start/End: Original strand, 13783481 - 13783595
Alignment:
Q  447 agaccacctccaatggagttattgaaagccattttcaacttattgaatcattggagaagggttattgaagatgatgtggatgaaagagatgataaaccaa 546  Q
    |||||||| ||||||| |||||||||||||||||||||| ||| ||  |||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  13783481 agaccacccccaatggggttattgaaagccattttcaacctatcgagccattggagaaggcttattgaagatgatgtggatgaaagagatgatgaaccaa 13783580  T
Q  547 ttcaacaagttgaaa 561  Q
    ||||||| |||||||    
T  13783581 ttcaacatgttgaaa 13783595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 457 - 574
Target Start/End: Complemental strand, 29732453 - 29732336
Alignment:
Q  457 caatggagttattgaaagccattttcaacttattgaatc-attggagaagggttattgaagatgatgtggatgaaagagatgataaaccaattcaacaag 555  Q
    |||||| |||||||||||| | |||||||| |||||| | |||||||||||| ||||||| |||| |||||||||||||||||| ||||| ||||||| |    
T  29732453 caatggggttattgaaagcaaatttcaact-attgaaaccattggagaaggggtattgaaaatgaggtggatgaaagagatgatgaaccatttcaacatg 29732355  T
Q  556 ttgaaagtctgccaccgta 574  Q
    |||||||||||||||||||    
T  29732354 ttgaaagtctgccaccgta 29732336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 457 - 567
Target Start/End: Original strand, 43523573 - 43523684
Alignment:
Q  457 caatggagttattgaaagccattttcaacttattgaatc-attggagaaggg-ttattgaagatgatgtggatgaaagagatgataaaccaattcaacaa 554  Q
    |||||| ||||||||||||||||||||||| |||||| | |||||||||||| ||||| || ||||||||||||||||||||||| ||||| |||||||     
T  43523573 caatggggttattgaaagccattttcaact-attgaaaccattggagaaggggttattaaaaatgatgtggatgaaagagatgatgaaccatttcaacat 43523671  T
Q  555 gttgaaagtctgc 567  Q
    |||||||||||||    
T  43523672 gttgaaagtctgc 43523684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 447 - 566
Target Start/End: Original strand, 38204624 - 38204743
Alignment:
Q  447 agaccacctccaatggagttattgaaagccattttcaacttattgaatc-attggagaagggttattgaagatgatgtggatgaaagagatgataaacca 545  Q
    |||||||| ||||||| |||||||||||| | |||||||| |||||| | |||||||||| | ||||||| ||||||||||||||||||||||| |||||    
T  38204624 agaccacccccaatggggttattgaaagcaaatttcaact-attgaaaccattggagaagaggtattgaaaatgatgtggatgaaagagatgatgaacca 38204722  T
Q  546 attcaacaagttgaaagtctg 566  Q
     ||||||| ||||||| ||||    
T  38204723 tttcaacatgttgaaaatctg 38204743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 447 - 567
Target Start/End: Complemental strand, 44150665 - 44150544
Alignment:
Q  447 agaccacctccaatggagttattgaaagccattttcaacttattgaatc-attggagaaggg-ttattgaagatgatgtggatgaaagagatgataaacc 544  Q
    ||||||||| |||||| ||||||||||| ||||||||||| |||||| | |||||||||||| |||||||| ||||||| ||||||||||||||| ||||    
T  44150665 agaccaccttcaatggggttattgaaagtcattttcaact-attgaaaccattggagaaggggttattgaaaatgatgttgatgaaagagatgatgaacc 44150567  T
Q  545 aattcaacaagttgaaagtctgc 567  Q
    | |||||||  |||||| |||||    
T  44150566 atttcaacatcttgaaaatctgc 44150544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 447 - 567
Target Start/End: Complemental strand, 24349262 - 24349141
Alignment:
Q  447 agaccacctccaatggagttattgaaagccattttcaacttattgaatc-attggagaag-ggttattgaagatgatgtggatgaaagagatgataaacc 544  Q
    |||||| | |||||||  |||||||||||||||||||||| |||||| | |||||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  24349262 agaccatccccaatgggattattgaaagccattttcaact-attgaaaccattggagaagaggttattgaagatgatttggatgaaagagatgatgaacc 24349164  T
Q  545 aattcaacaagttgaaagtctgc 567  Q
    | ||||||| |||||||||||||    
T  24349163 atttcaacatgttgaaagtctgc 24349141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 447 - 572
Target Start/End: Original strand, 49026711 - 49026837
Alignment:
Q  447 agaccacctccaatggagttattgaaagccattttcaacttattgaatc-attggagaaggg-ttattgaagatgatgtggatgaaagagatgataaacc 544  Q
    |||||||| ||||||| ||||||||||||||||||||||| |||||| | ||| |||||||| |||||||| |||| |||||||||||||||||| ||||    
T  49026711 agaccacccccaatggggttattgaaagccattttcaact-attgaaaccattcgagaaggggttattgaaaatgacgtggatgaaagagatgatgaacc 49026809  T
Q  545 aattcaacaagttgaaagtctgccaccg 572  Q
    | ||||||| ||||||| |||| |||||    
T  49026810 atttcaacatgttgaaaatctgacaccg 49026837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 447 - 567
Target Start/End: Complemental strand, 11908704 - 11908583
Alignment:
Q  447 agaccacctccaatggagttattgaaagccattttcaacttattgaatc-attggagaaggg-ttattgaagatgatgtggatgaaagagatgataaacc 544  Q
    ||||||||  |||||| ||||||||||||||||||||||| |||||| | ||| |||||||| |||||||| ||||||||||||||||||||||| ||||    
T  11908704 agaccaccctcaatggggttattgaaagccattttcaact-attgaaaccattagagaaggggttattgaaaatgatgtggatgaaagagatgatgaacc 11908606  T
Q  545 aattcaacaagttgaaagtctgc 567  Q
    | ||||||  ||||||| |||||    
T  11908605 atttcaacgtgttgaaaatctgc 11908583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 447 - 567
Target Start/End: Complemental strand, 39009287 - 39009167
Alignment:
Q  447 agaccacctccaatggagttattgaaagccattttcaacttattgaatc-attggagaaggg-ttattgaagatgatgtggatgaaagagatgataaacc 544  Q
    |||||||| ||||||| ||||||||||||||||||||||| |||||| | |||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  39009287 agaccacc-ccaatggggttattgaaagccattttcaact-attgaaaccattggagaaggggttattgaaaatgatgtggatgaaagagatgatgaacc 39009190  T
Q  545 aattcaacaagttgaaagtctgc 567  Q
    | |||| || ||||||| |||||    
T  39009189 atttcagcatgttgaaaatctgc 39009167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 466 - 567
Target Start/End: Complemental strand, 23090186 - 23090084
Alignment:
Q  466 tattgaaagccattttcaacttattgaatcattggagaaggg-ttattgaagatgatgtggatgaaagagatgataaaccaattcaacaagttgaaagtc 564  Q
    |||||||||||||||||||||  |  || ||||||||||||| |||||||| |||||||||||||||||||| || ||||| ||||||| ||||||| ||    
T  23090186 tattgaaagccattttcaactactgaaaccattggagaaggggttattgaaaatgatgtggatgaaagagataatgaaccatttcaacatgttgaaaatc 23090087  T
Q  565 tgc 567  Q
    |||    
T  23090086 tgc 23090084  T

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